Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03673 ATGGCCACCTCTCAGCTCACAGCATCATCAATTTCTACAAGGAACTTGGCATCTTTTGAAGGACTTCGACCTTCAGCGCTTCACTTTCCTTCTGTCAGAATTGGCAATCCCTCACGAACCTCCTTCCGGGGTCTCGTCGTCAAGGCCGCAACTGTTGTTGCCCCCAAGTACACCGCTATTAAGCCTCTGGGTGACAGGGTACTGATTAAAATTAAGGAAGCAGAAGAGAAGACCGAGGGTGGGATTTTGCTTCCCACAACTGCTCAAACAAAGCCTCAAGGGGGTGAGGTCGTTGCTGTTGGAGAAGGAAAGACAGTTGGGAAGAGTAACGTGGAAATTAGTGTGAAGACTGGCGCACAAGTTGTGTATTCCAAGTATGCAGGTACTGAGGTGGACTTCAATGGTACAAAGCATCTTATTCTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTCCTCATAAAGGTACTTCCTCTATGA 519 0.4644 MATSQLTASSISTRNLASFEGLRPSALHFPSVRIGNPSRTSFRGLVVKAATVVAPKYTAIKPLGDRVLIKIKEAEEKTEGGILLPTTAQTKPQGGEVVAVGEGKTVGKSNVEISVKTGAQVVYSKYAGTEVDFNGTKHLILKDDDIVGILETDDIKDLKPLNDRVLIKVLPL. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03673 172 PANTHER 10 KDA HEAT SHOCK PROTEIN 57 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca6g03673 172 FunFam 20 kDa chaperonin, chloroplastic 53 152 - -
Seca6g03673 172 Pfam Chaperonin 10 Kd subunit 60 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca6g03673 172 PRINTS 10kDa chaperonin signature 82 103 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca6g03673 172 PRINTS 10kDa chaperonin signature 60 75 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca6g03673 172 PRINTS 10kDa chaperonin signature 116 128 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca6g03673 172 PRINTS 10kDa chaperonin signature 137 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca6g03673 172 SUPERFAMILY GroES-like 58 151 IPR011032 -
Seca6g03673 172 CDD cpn10 60 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca6g03673 172 Gene3D GroES chaperonin 52 154 IPR037124 GO:0006457
Seca6g03673 172 Hamap Co-chaperonin GroES [groES]. 59 151 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca6g03673 172 ProSitePatterns Chaperonins cpn10 signature. 60 84 IPR018369 GO:0005524|GO:0006457
Seca6g03673 172 SMART Cpn10_2 59 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03673 Seca-Chr6 103982346 103984613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03673 1 169 Calmodulin-binding Proteins AT5G20720 72.515 4.25e-86 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03673 K04078 - gmx:100814751 283.108