Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03672 ATGAAGGCTCCTTCCAATGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCGTTGGTTTCATTACCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAACAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTTATACCAAGTTATCCTAACCTTCCATCCAAGTTGATTTGCATTCTTCACAATGTTGCCCTGCATGCTGATCCTGAAACTGATGAGGTTTATGCACAGATGACCCTTCAGCCAGTAAATAAATATGACAAGGAAGCAATGATGGCATCAGACATGAGTCTCAAACAAAGCCAACAACCTACGGAATTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTACCTCGTAGAGCAGCTGAGAAAATATTTCCCCCTCTGGATTTTTCCATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACACCACATGGACATTTAGGCATATTTATCGTGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTATTTGCTGGAGATTCAGTTCTTTTCATCAGAGATGAAAAACAGCAACTTCTTTTAGGTATAAAGAGAGCTAATAGACAGCAGCCAGCACTATCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCGTTCACTATATTTTATAATCCAAGGGCCAGCCCCTCTGAATTTGTAATTCCAATCGCCAAGTATAATAAATCCTTGTTCACTCAAGTATCACTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAGTCAGGTGTACGCAGATATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTCAGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCAACTGCTGGTGAGCGCCCAAGTAGAGTTTCAATTTGGGATATTGAGCCAGTAGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAAGCAACCAGGAATGCCAGAAGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCCATGCCTTGGCTTGGAGATGACCTGGGAATGAAGGATGCCTCAAATTCAATCTTTCCCGGTTTGAGTTTAGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCACAATCAGGGTTTCTGCCTCCATCCATGCTTTCATCTAATACACTGCATGGTAATCTTAACACTGATGATCCATCCAAGTTATTGAGCTTTCAAAACCCCGTCCTTTCTGCACCAAGTCTTCAATTTAACAAACCTAATTTACCAAACCAAGTGAATCACTTGCAACAGCCCCCAACGTCGTGGCCTCAGCAGCAGCAGCAGCAACAGCAGAAGCTGCAGTCATTATTGCAAACGCCATTAAACCAGCTCCAGCAGCAGCAGCAAAGGCAACAACAACTGCCTGGACCACAAAACCTGCCACAGGCACAGCAACAACCCCAACTTCCTCAGCAGAGAGCACAGCAGCCACAACAACAGCAACAGTCTAGTCAACACACCATTATGAATAATGGAACAGTTCCTTCTAGCCAGATACCAAATCAGTGTGTACAGCAACCAGTATCCTATTCTCATCTTCAGCAACAGCAATTACTCTCAGGAAGTATCTCACCCCAACAAAGTTTCCAATCGGCTGGTAAGAATACAATGCTAATGACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGACCAGCAAGCTACTCTCTTACAGAGGCAGCAGCAGCAACAGACACAGTTGCAACAATCTCCATTGCAGTTATTGCAACAAAGCATGTCACAAAGGGCATCACAGCAACCACAAATGACTCAAATGTCACCGCAAAACAGCTCAGAGCAGCAACCACAGTTACAGTTGCTACAGAAATTGCAACAGCAGCAGCAGCAACTCCTGTCCACATCTAGCTCAAATTTGCAGTCTCAGCTTCTGCAGCAACAAAATACTCACCAACAAAACCAGCAACTGCCACAGTTGCCTCTATCTCAGCATCAGCCTCAACAGCTTGGCAACAATGCATTCTCAATGGACAGGCTTCTCAACAACAACTTCTCTTTTTCAGCTCTTATGCAATCACAGCAGCATCCTGTAAGCCAACCCCAGCATACACAGAAATCGCCAACTTATACTAGAGCTCCCTCTACTCTTACAGATGCAGATGCCCCATCATGCTCAACTTCTCCATCTACTAATAATTGCCAGATGTCTCCTCCAAACCTCCTGAAAAGAAATCAACAAGTAACAGTCACATTAGGAGGGACTTTGATAGTTGAACCAACCAATAATTTAATACAGGAGCTTCAGACTAAGTCTGATATGCAGATCAAACATGAATTAGCCAATGTAAAAGGACCTGACAAGCTAAAGTATAAAGGGACAATTACTGATCAGCTGGAAGTTTCTTCTGGAACACCTTACTGTATTGATCCTGGTAATATCCACCAGAACTTCCCACTTCCCAACTTCTGCATGGATGCGGATGTCCAATCACACGCAAGAAATAATCTACCATTTGCCTCCAATCTCGATGGATTAACACCTGATACTTTGCTATCAAGGGGGTATGACTCTCAAAAAGATCTTCAAAACTTGCTGTCTAATTATGGTGGTGGTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTAGTCCACAGTCATTTGGGGTGCCAAATTTGCCTTTTAAACCAGGATGCTCAAGTGATATTGCCATCAATGATACTGGGGTTTTGAATAATGGCTTGTGGGCTAATCAAACACAACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGATACAAGGGATATGATGAACTTCGGCATGATTTGGCTCGTATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGAGTGGAAACTAGTATATGTGGATCATGAAAACGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAACAACTGAGCTTGGATGGGGATTTAGGTCATGTTCCAATCCCCAATCAAGCTTGTAGTGGGACAGAAAATGGCAATGCATGGAGAGGACAGTATGATGATAACTCTGCAGCCTCATTCAATAGATAA 3333 0.4341 MKAPSNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICILHNVALHADPETDEVYAQMTLQPVNKYDKEAMMASDMSLKQSQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPIAKYNKSLFTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESDIENAFKRAMPWLGDDLGMKDASNSIFPGLSLVQWMSMQQNNQFSAAQSGFLPPSMLSSNTLHGNLNTDDPSKLLSFQNPVLSAPSLQFNKPNLPNQVNHLQQPPTSWPQQQQQQQQKLQSLLQTPLNQLQQQQQRQQQLPGPQNLPQAQQQPQLPQQRAQQPQQQQQSSQHTIMNNGTVPSSQIPNQCVQQPVSYSHLQQQQLLSGSISPQQSFQSAGKNTMLMTSLPQDSQFQQQIDQQATLLQRQQQQQTQLQQSPLQLLQQSMSQRASQQPQMTQMSPQNSSEQQPQLQLLQKLQQQQQQLLSTSSSNLQSQLLQQQNTHQQNQQLPQLPLSQHQPQQLGNNAFSMDRLLNNNFSFSALMQSQQHPVSQPQHTQKSPTYTRAPSTLTDADAPSCSTSPSTNNCQMSPPNLLKRNQQVTVTLGGTLIVEPTNNLIQELQTKSDMQIKHELANVKGPDKLKYKGTITDQLEVSSGTPYCIDPGNIHQNFPLPNFCMDADVQSHARNNLPFASNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGGPRDIETELSTAAISPQSFGVPNLPFKPGCSSDIAINDTGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPLRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQLSLDGDLGHVPIPNQACSGTENGNAWRGQYDDNSAASFNR. 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03672 1110 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Seca6g03672 1110 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca6g03672 1110 Pfam AUX/IAA family 980 1071 IPR033389 -
Seca6g03672 1110 MobiDBLite consensus disorder prediction 1088 1110 - -
Seca6g03672 1110 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 1072 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca6g03672 1110 MobiDBLite consensus disorder prediction 749 797 - -
Seca6g03672 1110 SUPERFAMILY DNA-binding pseudobarrel domain 115 255 IPR015300 -
Seca6g03672 1110 Gene3D - 123 227 IPR015300 -
Seca6g03672 1110 FunFam Auxin response factor 289 361 - -
Seca6g03672 1110 Gene3D - 978 1072 - -
Seca6g03672 1110 SUPERFAMILY CAD & PB1 domains 997 1061 - -
Seca6g03672 1110 Gene3D - 289 360 - -
Seca6g03672 1110 FunFam Auxin response factor 124 228 - -
Seca6g03672 1110 CDD B3_DNA 125 217 IPR003340 GO:0003677
Seca6g03672 1110 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Seca6g03672 1110 MobiDBLite consensus disorder prediction 641 679 - -
Seca6g03672 1110 ProSiteProfiles PB1 domain profile. 983 1076 IPR000270 GO:0005515
Seca6g03672 1110 FunFam Auxin response factor 978 1072 - -
Seca6g03672 1110 MobiDBLite consensus disorder prediction 470 570 - -
Seca6g03672 1110 SMART B3_2 126 228 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03672 Seca-Chr6 103968995 103977138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03672 1 487 B3 DNA Binding Superfamily AT1G19220 82.752 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca6g03672 AUX_IAA 2.8e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03672 K14486 - gmx:100815277 1602.8