Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03671 ATGTCATTCTTTATAAGTCACACCATTCGACTGTTAATTTCACAGGTTGTGGTATTCTTTTCAACATGTGATGCAGTAGATTTTCACTTTTCACTATTAAGTGAATTCCAATTTTCATCCTATCCACAAACAGAAGGAGGGATCAAACAGATGTTTCTTGGGTGCAAAACTTTTCGATTACATGGTAATATGGAACAGGAAGATCGGCTAAAAGCTTTTCAGGCCTTTAAAACAGAGAAATCTGCTCTGCTTTTGTCCACTGATGTTTCTGCTCGAGGTCTGGATTTCCCGAAGGTTAGATGCATCATACAGTATGATTCTCCTGGAGAAGCTACTGAATATGTGCATAGAGTTGGTAGAACTGCTCGGCTGGGTGAAAAAGGAGAATCATTGTTATTTCTGCAACCAGTTGAAATAGACTATTTACAGGACTTGGAGAAACATGGTGTCTCATTAACAGAGTATCCTCTCCTCAAAGTCTTGGATAATTTTCCTCTGTATGGACAGCAGAAACACTTGAAGAAATCTGTTTTCATAGATTCACATCCCTGGGTCCTCTCTCTCCAGAAGGCACTTGAATCCTTCATCATTTCCAAGCCTAAGATGGATGAACTTGCCAGGAGGGCATTTTGCTCTTGGGTCCGTGCATACACAGCGCATCGCGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCATGTAGCAAAAAGCTTTGCATTGAAACAACAACCCTCCTTAGTTGGAAAGTCATTCCAGAAGCAAACTCAGAAGAGGAAGAGATATGAGAAGAAAAATGGGCTGTCAAAAAGGAGAAAAGTTGCAAGGGTGACATAA 846 0.4043 MSFFISHTIRLLISQVVVFFSTCDAVDFHFSLLSEFQFSSYPQTEGGIKQMFLGCKTFRLHGNMEQEDRLKAFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGEKGESLLFLQPVEIDYLQDLEKHGVSLTEYPLLKVLDNFPLYGQQKHLKKSVFIDSHPWVLSLQKALESFIISKPKMDELARRAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGKSFQKQTQKRKRYEKKNGLSKRRKVARVT. 282
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03671 281 MobiDBLite consensus disorder prediction 257 281 - -
Seca6g03671 281 MobiDBLite consensus disorder prediction 253 281 - -
Seca6g03671 281 Pfam Domain of unknown function (DUF4217) 189 249 IPR025313 -
Seca6g03671 281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 164 IPR027417 -
Seca6g03671 281 SMART helicmild6 42 125 IPR001650 -
Seca6g03671 281 SMART DUF4217_3 187 252 IPR025313 -
Seca6g03671 281 PANTHER RNA HELICASE 11 253 - -
Seca6g03671 281 Pfam Helicase conserved C-terminal domain 13 125 IPR001650 -
Seca6g03671 281 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 8 172 IPR001650 -
Seca6g03671 281 CDD SF2_C_DEAD 10 134 - -
Seca6g03671 281 Gene3D - 4 278 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca6g03671 Seca-Chr6 103941698 103945565 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03671 11 157 Eukaryotic Initiation Factors Gene Family AT3G19760 30.405 1.42e-18 83.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03671 K14806 - gmx:100805157 470.314