Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03670 ATGGGGACGAAGAAGAGTAATCAGGTGAATGAGAAGAAGGGTGTCGATAATGGCACCAACGGTAGTGTTTTTGCTTCTTGCTCCTTCTCTAGCCTTGGTCTCCACCCCTCCTTATGTGACCAACTTCGTGGTATTCTTCTTCTTCTTTGTTTTGTGAATTTGGTTGCCAATGATTCTGGAGGCATGCCTGAAAGGTTGGGCTTTGAAGTTCCAACGTTGGTGCAAGCTCAAGCAATTCCTGTTATTCTTTCCGGGCGTCATGCACTGGTTAATGCTGCCACGGGCACGGGGAAGACTATTGCGTACCTAGCTCCAATTATTCATCACTTGCAGAATTATGAAAATCGAATCCAGCGCTCTGATGGGACATTTGCGTTGGTTCTTGTACCAACGCGTGAGCTATGTTTGCAGGTATATGAAATTCTTCAGAAGTTATTGCATCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTCATAGCGACTCCTGGGCGCCTTTTGGATCACTTGAAGAATACATCATCATTCTTGTACACAAATTTGCGCTGGATAATTTTTGACGAAGCTGATATGATTTTGGAATTAGGATTTGGAAAAGATATACAGGGAATACTAGATCTTTTAGGTTCAAGGAAAACAGGTCATGATGATCAAGAGAATGCAGTTCCAAGGCCCTCCAAAATTCAAAGACAGAATTTGCTTTTGTCAGCCACCTTAAATGAGAAAGTAAACCACCTTGCTAAAATTAGTCTAGACAATCCAGTGACAATTGGTCTCGATGATAAAAGAATAGAACCAATTTCAACAATTAAAAGCCTTGATCATTCAGAATCTGATGAAGACAATGAAGACAAGTATTCCAGTAAAATACCAACAGTTGGAGATTATAAAGTCCCCGTACAGTTGATTCAGAGATACTTGAAAGCGCCTTGTGGTTCACGGCTGCCAGTACTTCTTTCAATTCTTAAGCATCTTTTTGAAACGGAACCTTCACAAAAGGTAAGGCTTAAATTCAATCTTCAGCCCCTATTCCTGGAATCTATAAGATACTTTTAA 1110 0.4081 MGTKKSNQVNEKKGVDNGTNGSVFASCSFSSLGLHPSLCDQLRGILLLLCFVNLVANDSGGMPERLGFEVPTLVQAQAIPVILSGRHALVNAATGTGKTIAYLAPIIHHLQNYENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFLYTNLRWIIFDEADMILELGFGKDIQGILDLLGSRKTGHDDQENAVPRPSKIQRQNLLLSATLNEKVNHLAKISLDNPVTIGLDDKRIEPISTIKSLDHSESDEDNEDKYSSKIPTVGDYKVPVQLIQRYLKAPCGSRLPVLLSILKHLFETEPSQKVRLKFNLQPLFLESIRYF. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03670 369 PANTHER RNA HELICASE 25 343 - -
Seca6g03670 369 Pfam DEAD/DEAH box helicase 73 263 IPR011545 GO:0003676|GO:0005524
Seca6g03670 369 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Seca6g03670 369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 275 IPR027417 -
Seca6g03670 369 Gene3D - 1 278 IPR027417 -
Seca6g03670 369 SMART ultradead3 67 288 IPR014001 -
Seca6g03670 369 CDD DEADc_DDX31 64 276 - -
Seca6g03670 369 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 79 275 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03670 Seca-Chr6 103939406 103941396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03670 28 275 Eukaryotic Initiation Factors Gene Family AT3G13920 28.226 6.92e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03670 K14806 - gmx:100805157 556.984