Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03668 ATGGAAGTCAAGCCCATACTTCTGCAATTTTTTCTCCTTCTCTTACTACCTTTGCTTACAGTTCCTGTACTCGCTTCCAATGCGACGCTTAACGAGACTTGTGGTTACTTCAATCGTTCTCTCAATAGACACGCTCAAGCACCATGCCCGAATGGTTGGGTTATTGACCCTAATAAGACCAAGTGCTTTCTCCATGTTGGGAGGCCTCAATCTTGGAATGACTCAGAAACCTGTTGTAGTAAATATGGTGGACATTTAGCATCATTGACATCGCTTCAGGAACTACACTTTGCTCAAAGCCTATGCGGTGAATCTATAAATAGTTGCTGGATTGGTGGAAGAGTCAACTCTACAGCTGGTTTTCAGTGGATCTGGTCTGACAATTCTCAGTGGAATAATTCCATATTTCCTTTGGCTGATGTTCCAGCCAATTGTACTGGAAATGGACTATCCTGTCACAGGAACAGTACAGACAATTTATGTACAGTAACGACTAATAACTCAAAATCTCTCATTGGTGAGAGATGTGACAATCCTCATGCTTCTCTGTGTATACTTGACATAGATATGAAATGTAACCATATGCACTGCCACAGGGAATACCTTATCATCCTTGCAGTGGTGAGTGCATTGATACTCTCCACAACATTAGCGGTGGTAGTTTGGCTTCTTGTATATAAGCGGGGCAAGAAGAGAAGGCGGTCTAGAAAACTATCTGATCCAGCAGCTTCACTTCCCTCATGGAAAGTCTTTACCAAAGAGGAATTAAGATCTATTACAAAGAATTTCAGTGAAGGTAACCGCCTCATTGGGGATGCCAAGACTGGTGGTACATACAGTGGGGTCCAACCAGATGGCTCAAAGGTTGCAGTTAAGAGATTAAAAAGATCAAGCTTTCAGAGGAAAAAGGAGTTCTATTCTGAAATTGGCAGGGTTGCAAGGCTTCGACATCCAAATCTGGTCGCTGTGATGGGATGCTGCTATGATCATGGTGACCGATACATTGTTTATGAGTTTGTTGCTAATGGACCCTTAGATAAATGGCTATATCACATACCAAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCAACAACACTTGCTCAAGGAATTGCGATATCATGA 1137 0.4257 MEVKPILLQFFLLLLLPLLTVPVLASNATLNETCGYFNRSLNRHAQAPCPNGWVIDPNKTKCFLHVGRPQSWNDSETCCSKYGGHLASLTSLQELHFAQSLCGESINSCWIGGRVNSTAGFQWIWSDNSQWNNSIFPLADVPANCTGNGLSCHRNSTDNLCTVTTNNSKSLIGERCDNPHASLCILDIDMKCNHMHCHREYLIILAVVSALILSTTLAVVVWLLVYKRGKKRRRSRKLSDPAASLPSWKVFTKEELRSITKNFSEGNRLIGDAKTGGTYSGVQPDGSKVAVKRLKRSSFQRKKEFYSEIGRVARLRHPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLYHIPRGGRSLDWAMRMKIATTLAQGIAIS. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03668 378 ProSiteProfiles Protein kinase domain profile. 264 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03668 378 SUPERFAMILY C-type lectin-like 32 185 IPR016187 -
Seca6g03668 378 ProSiteProfiles C-type lectin domain profile. 58 185 IPR001304 -
Seca6g03668 378 FunFam C-type lectin receptor-like tyrosine-protein kinase 241 339 - -
Seca6g03668 378 Pfam Protein tyrosine and serine/threonine kinase 283 375 IPR001245 GO:0004672|GO:0006468
Seca6g03668 378 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 102 375 - -
Seca6g03668 378 CDD CLECT 61 184 - -
Seca6g03668 378 SUPERFAMILY Protein kinase-like (PK-like) 237 376 IPR011009 -
Seca6g03668 378 SMART CLECT_2 49 185 IPR001304 -
Seca6g03668 378 Gene3D Phosphorylase Kinase; domain 1 239 339 - -
Seca6g03668 378 Gene3D - 35 187 IPR016186 -
Seca6g03668 378 Pfam Lectin C-type domain 69 184 IPR001304 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03668 Seca-Chr6 103930333 103935826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03668 79 377 Receptor kinase-like Gene Family AT1G52310 63.961 2.30e-126 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Seca6g03668 Lectin_C 3e-10 CL0056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03668 - - gmx:100779497 632.098