Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03647 ATGGCTTCTGATTCCGTTCCTTCTCTCAACGTGGTGGGATATACCGCTTCTCCACCAAAACACCCACCATCTCTCTTACTTAACATTCTCATAACCGTAACGGTCTTCGCCATCGCCGTCACCGTCTTCCTAGTTCTCTATTTCATCCTCCGTTACCGTTGCCGTTGCCTCCGCCGTCTCTCTCCATCACCTTCCGCAGTTTTCTCCTACGGCCATCGGATATCGCCGGAGATTACTAAGTCTTCCACCGTCGACTCCCTCCCGCTGTTCGCCTTCTCTTCCATCAGCCGCCGCTCCTCCTCCGCCGGCGCTGACTGCGCAGTTTGCTTGTCGAAGTTCGAGCAGCGCGACCTTCTCCGCCTCCTCCCTCTCTGCTGTCACGCCTTCCACGCTGAATGCATCGACACCTGGCTCCGATCGAACCACACCTGTCCGCTCTGCCGTTCCGCCGTCTTCGCTTCGGAATCGGACCTCACGAAGTCTTTCCGGTCGTCTTCCACTGCCGGAGGGAACAGCTTCCGGCTGGAGATAGGTAACGTCAGCAGCCGCCGCGGAGCCGCATCTGACAATGCCGCCGGAGAAACGGGCGGGAGGTCCTATTCCGTGGGCGCGTTTGAGTATTTTGTAGATGAGGAGGCTGAGGTTCCGTTCAGCCACGCTCACCGGGGAATCGTTTCCGGCGAAAAAGATGACTCACCCGCAGTAGAGTCCCAGGCGGATTCTCATCCAAGCTTGGCCGGCGAGGTTGGGCGTGAAAGCAGCTGGTTGAAAGATTATGCTGATCGGCTCTCTGCTAGGATGTCATTTCGAAGCTCTGGAAGGTTCTTCACTGGGAGTAGTCGACGAAGCGACGTCGTTGGAGTAGGAGATTACGAAGTGGAAGCCAACCGTTTTGGGGAAGAAATCAGCGAAATGTTTAGTTGGCTCTCAGGGGTTTGA 939 0.5644 MASDSVPSLNVVGYTASPPKHPPSLLLNILITVTVFAIAVTVFLVLYFILRYRCRCLRRLSPSPSAVFSYGHRISPEITKSSTVDSLPLFAFSSISRRSSSAGADCAVCLSKFEQRDLLRLLPLCCHAFHAECIDTWLRSNHTCPLCRSAVFASESDLTKSFRSSSTAGGNSFRLEIGNVSSRRGAASDNAAGETGGRSYSVGAFEYFVDEEAEVPFSHAHRGIVSGEKDDSPAVESQADSHPSLAGEVGRESSWLKDYADRLSARMSFRSSGRFFTGSSRRSDVVGVGDYEVEANRFGEEISEMFSWLSGV. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03647 312 SMART ring_2 106 147 IPR001841 -
Seca6g03647 312 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Seca6g03647 312 FunFam E3 ubiquitin-protein ligase ATL6 71 154 - -
Seca6g03647 312 SUPERFAMILY RING/U-box 83 154 - -
Seca6g03647 312 MobiDBLite consensus disorder prediction 226 249 - -
Seca6g03647 312 CDD RING-H2_EL5-like 105 148 - -
Seca6g03647 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 23 218 - -
Seca6g03647 312 Pfam Ring finger domain 105 148 IPR001841 -
Seca6g03647 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 152 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03647 Seca-Chr6 103716597 103717535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03647 82 175 C3H Transcription Factor Family AT4G28890 51.064 8.32e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03647 K10663 - gmx:100804962 340.502