Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03645 ATGTCAGAAGCAGTCTTAGGTGGTCACCCAAAGCATGATCACTATGAATGCAATTTTACAAGATATCCTAATCTTTGTGCTGAAACGTTGAGGGTCAGTGGATTAGGTTCTGGGAATCAAAATGTTGATATCATTCAGACCCTTGTTAACAAAACCATATTTGAAACCAACTTGCCAACTTCATATTTTGCTGAATTCAAGACTCAGGATGCTCAACAAACACATTCTGTCGCAGAGTTAATGAGCATGTCACTCAAAAGGCTGGACCAATCCTTGAAAGCACTAAAATCCCCGACAAGAAACAAGAATGACATCCAAACATGGCTAAGTGCTTCTCTAACTTTCCAACAAGCTTGTAAAGACCATGTAGATGCACACACCTCTAAACTCTCTATAGCAGATGATGACCTCATCATGGAAAGAATGTCTAAGAAGATGGACTATCTTTCTAAACTAGGAAGCAACTCATTAGCACTTGTTAATAGGATCACCAACAATGCAAAGAGTGGTAATGAAAAGGAACATGAATCATTTCCAGAGTGGGTATCTTCCAAAGGAAGAAAACTCCTTCAGGGAGCCAGTACCATAAAAGCAAATGTCATAGTGGCACAAGATGGTACAGGAAACTACAAGACAGTTTCTGAAGCCATTGAAGTAGCTCCAGGGACACGGTTTGTGATTTATGTTAAGGCAGGGATTTATAAGGAGAAGATTCGTGTTAAGAAGGATGGTATCACTTTGATAGGAGAAGGCAAATATTCTACTATCATTGTTGGAGATGACAGCGTTGCTCAGGGTGCAATAACAGGAGATGGATTTATTGCACGAGATATTGGTTTCCACAACAATGCTGGACCACGAGGTGAACAAGCCGTGGCATTGCTCATTTCTTCTGATCGTTCAGTACTCTATAGATGCAGCATAGTAGGATACCAAGATACCCTCTATGCACTTTCACTTCGCCAATTCTACAAAGAATGTGACATCTATGGCACCATAGACTTTATCTTTGGTAACGCAGCTGCAGTTTTCCAAAGCTGCAACTTGGTGCTTCGTCACCCATATGGTAAAGGCTACAATGTCATTCTAGCCAATGGAAGAACAGACCCGGGACAGAACACTGGTTTCTCTGTTCATAAGTGTGTCATAACAACAAGCTCAGATTTTTCTCATGTGAAACATTCCTATAGTTCTTTTCTTGGGAGGCCTTGGAAGGAGTATTCTAGGTCTGTGGTGATGGAATCAACTATAGATGATGCTATTGCAGGTAGGGGTTGGATTGAGTGGCCTGGTTATGGAAGCTCTGTGTTGAAAACTCTGTATTATGCAGAGTATGCTAATGAAGGCCCTGGTGCTGGAACTGCCAAGAGGGTTCAATGGCCTGGTTTTCATGTTGTTGGAGCTGAAGAGGCTGCAAAGTTCACTGTTGCTAATTTCATTGGTGGAAGTTCATGGATTCCCTCAAGTGAGGTCACTTTCATTTCAGGACTTAACTGA 1497 0.4162 MSEAVLGGHPKHDHYECNFTRYPNLCAETLRVSGLGSGNQNVDIIQTLVNKTIFETNLPTSYFAEFKTQDAQQTHSVAELMSMSLKRLDQSLKALKSPTRNKNDIQTWLSASLTFQQACKDHVDAHTSKLSIADDDLIMERMSKKMDYLSKLGSNSLALVNRITNNAKSGNEKEHESFPEWVSSKGRKLLQGASTIKANVIVAQDGTGNYKTVSEAIEVAPGTRFVIYVKAGIYKEKIRVKKDGITLIGEGKYSTIIVGDDSVAQGAITGDGFIARDIGFHNNAGPRGEQAVALLISSDRSVLYRCSIVGYQDTLYALSLRQFYKECDIYGTIDFIFGNAAAVFQSCNLVLRHPYGKGYNVILANGRTDPGQNTGFSVHKCVITTSSDFSHVKHSYSSFLGRPWKEYSRSVVMESTIDDAIAGRGWIEWPGYGSSVLKTLYYAEYANEGPGAGTAKRVQWPGFHVVGAEEAAKFTVANFIGGSSWIPSSEVTFISGLN. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03645 498 ProSitePatterns Pectinesterase signature 2. 329 338 IPR033131 -
Seca6g03645 498 FunFam Pectinesterase 10 164 - -
Seca6g03645 498 Pfam Plant invertase/pectin methylesterase inhibitor 17 159 IPR006501 GO:0004857
Seca6g03645 498 Pfam Pectinesterase 199 482 IPR000070 GO:0030599|GO:0042545
Seca6g03645 498 SMART PMEI_2 9 159 IPR006501 GO:0004857
Seca6g03645 498 ProSitePatterns Pectinesterase signature 1. 221 240 IPR018040 -
Seca6g03645 498 FunFam Pectinesterase 4 196 497 - -
Seca6g03645 498 CDD PMEI-like_3 17 165 - -
Seca6g03645 498 Gene3D Invertase/pectin methylesterase inhibitor family protein 14 165 IPR035513 -
Seca6g03645 498 SUPERFAMILY Pectin lyase-like 194 495 IPR011050 -
Seca6g03645 498 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 17 164 IPR035513 -
Seca6g03645 498 Gene3D - 192 497 IPR012334 -
Seca6g03645 498 PANTHER PECTINESTERASE 17 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03645 Seca-Chr6 103700653 103703499 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03645 17 498 Carbohydrate Esterase AT3G49220 42.054 6.15e-126 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03645 K01051 - gmx:100795439 748.814