Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03644 ATGGCTCTTTCTTCAACACTAACACCCACTATCACACTCATCTTCTCCTTGGTGTTGTTTCTAGGCCTGTGCACGCCATGGGGTGCTGCTGCTCCCACTGACATTGTGGGATTAGAGTGCTTGAAGGTCGCTCCTTCTGAATTCGCTGGGTCAGTGAGAACTGTCGTTGGCATTTTGCAAGATGTTATCTCTATTCTCTCAGAGTTCGGCAATGGCTTCGGCGATTTTCGTCTCTCTAATGCCATTTCTGATTGCCTCGATTTGCTTGATCTCTCCTCTGATGAACTTGACTGGTCTGTCTCCGCTACACAGACTCCCAAAGGGAAGCATAACAGTACTGGGAAGTTGAGTTCTGATTTGAGGACATGGTTAAGTGCTGCACTTGCGAATCCAGAGACATGCATGGATGGATTTGAAGGTACAAATGGCATGGTGAAGGGTCTAGTATCCACTGGCCTTGGTCAAATGATGTCGTTGTTGAAGGAGCTTCTCACCCAGGTGGACCCTGTTTCGGATCACTTCATGGGGCAGAGTAAGGGTGAATTTCCTTGGTGGGTTAAACCAGGGGAAAGGAAGCTGCTGCAGGAAAATGGGGTGCGTGTGGATGCTGTTGTGGCTGCTGATGGGAGTGGGAACTATACTAAGGTGATGGATGCGGTGTTGGCAGCACCTGATTATAGCATGGAACGCTATGTGATACATATTAAGAGGGGTGTTTACAATGAGAATGTTGAGATCAAGAAGAAGAAATGGAACCTCATGATGATTGGAGATGGCATGGATGCTACAGTTATCTCCGGTAACCGGAGTTTCATCGACGGTTGGACCACATTCCGATCAGCTACCTTTGGTGAGAACACACTACTCTTTTCTTTCTTTCTTTCTTTCTTTTCTGTTAGTGGTAGAGGGTTCATAGCACGAGACATCACCTTCCAGAACACTGCAGGGCCCGAGAAGCACCAAGCAGTGGCTCTAAGATCTGACTCTGACCTCTCTGTATTCTACCGATGTGGGATCTTTGGTTACCAAGACAGCCTCTATACCCATACCATGCGCCAATTCTACAGAGAATGCAAAATCACTGGCACTGTGGATTTCATCTTTGGAGATGCCACTGCTCTTTTCCAAAACTGCCAAATAATGGCTAAGAAAGGGTTACCAAATCAAAAGAACACCATCACAGCTCATGGGAGAAAAGACCCTGATGAACCAACTGGTTTCTCCATCCAATTCTGCAACATCTCTGCTGATTCTGACCTTCTTACCTCAGTTAATTCCACTCAGACATACCTTGGAAGACCATGGAAACCATATTCTAGAACAATTTTCATGCAATCTTACATTAGTGATGTGTTAAGGCCAGAAGGGTGGTTAGAGTGGAATGGGGATTTTGCTTTGGACACATTGTATTATGCAGAGTACATGAATTATGGGCCAGGAGCAGGACTTAATAAGCGAGTTAAATGGCCAGGGTATCATGTGATGAATGATTCTAGTCAAGCTAGTAACTTTACGGTGACCCAATTTATTGAGGGGAATCTGTGGTTACCTTCAACAGGTGTGACGTTCACTGCTGGATTCAATGCCTCCACAACATTACACACCAAACTCTCTTCCTTAAGATCTTTCTGCAGCACTACTCCATACCCAGAAGTTTGCTTCAATTCATTGAAGCTGTCCATTTCAATAAATATAAATCCAAACATCATCAACTACCTCCTTCAGTCCCTCCAAGTAGCAATATCTGAAGCCACAAAGTTGTCTAACCAATTCCACAATGCAGGACACTCCAACATCATAGAGAAGCAAAGAGGAGCAGTCCAAGATTGCAGGGAACTCCACCAATCCACATTGGCTTCTTTGAAAAGATCATTATCTGGGATTCGTTCCCCCAACACTAGGAATCTAGTTGATGCAAGAACATACCTCAGTGCAGCACTCACCAACAAGAACACATGTCTAGAAGGTCTAGATTCTGCTTCTGGTACCCTTAAGCCAGTTCTGGTAAACTCTGTTATCAACACTTACAAGCATGTGAGTAATTCTCTTTCTATGCTCTCTAAGCCAGGGGTAGGGGCTCCCAAAGGCCACAAGAACCGGCGTCTGATGAGTGCTCCAAAGTGGTTGTCAAGAAGAGGCCGTAGCCTCTTGCAAAACTCAGATGGGGAAGAATATGATCCAAATGAAATGCTTGTTGTGGCTGCAGATGGAACTGGGAACTTCAGCACCATAACTGATGCAATCAACTTTGCTCCAAATAACAGCATGGATAGAGTAGTGATCTATGTCAAGGAAGGGGTTTATGAGGAAAATGTTGAAATCCCAAGTTATAAGACCAACATTGTTATGCTTGGGGATGGAAGTCATGTCACTGTCATAACTGGTAACAGAAGTGTGGTTGGTGGCTGGACCACTTTCAGATCTGCAACTCTAGCGGTTTCTGGTGATGGTTTTCTTGCAAGAGATATAGCATTTGAGAACAGTGCAGGGCCAGAGAAGCATCAAGCAGTGGCCTTGAGAGTCAATGCAGACTTGACTGCATTTTACAGGTGTGCCATTTATGGTTATCAAGACACTCTGTATGTTCACTCCTTTAGACAATTCTATAGAGAGTGTGACATTTATGGGACCATAGATTACATATTTGGGAATGCAGCAGTGGTTCTACAAGAATGTAACATTGTATCAAGAATGCCATTGCCTGGCCAATTCACTGTTATTACAGCTCAATCCAGAGATAACCCAGATGAGGACACTGGCATCTCAATCCAAAACTGCTCAATTATAGCTACCAGTGATCTTTATTCCAACTCTAGCAGCTTCAAGAGTTACCTTGGGAGGCCATGGAGGGTCTATTCTCGCACTGTTTACCTTGAGTCTTATATTGATGACTTTATTGATCCAAAGGGTTGGTCAAAGTGGTCTAATGATCAAGGGTTGGATACATTGTATTATGGTGAGTATGAGAATTATGGACCTGGTTCAACTACAGATAATAGGGTAGGATGGCTTGGTTACCATTTAATGGATTACAATGATGCCTATAATTTCACAGTTTCAGAGTTTATTACTGGTGATGATTGGCTTGAGTCTACTTCTTTTCCTTATAATGATGATTTTGACCTCATATCAGAAAGGAGAAAAAATGAGAAAAGACAAAAGCTGAAGAAGAAGATTATCATTGGTCTAGTTTCAGCCATTCTCCTTGCATGTATAATAAGTGCTGCAGCATTTGTTGTTGTAGTTAATAGATCTGGTCCTGACACCACCAAAAACACCAAGCATAAGGCTCCCTCAGCACCTGCCAATAATGCTCAACCTCAACATGTGGATAAATTTTCCAGGCTTGTGAAAATGATATGTAGTTCTGCAGTATACAAGAGCAAATGTGAAAGCACCCTTACTGAGGCATTGAAGAAGGACCCTAAATTGGCACAACCAAAGAATCTTCTCATGGTTTCTATGATACTTGCTGAGGCTGAGGTTAACAAGGCCTTCAACAAAACCACTACCTTGAAGTTTGCTTCTGAGCAGGAGAAAGGAGCATATGAAGATTGCAAGCAGTTGTTTGAGGATGCTAAGGAAGAGTTGGGATTCTCTATAACTGAAGTTGGTTCAAATGATTTGACCAAGCTTTCCACAAAAGCTCCTGAAATTAATAACTGGCTCAGTGCAGTCATGTCTTACCAACAAACCTGCATTGATGGTTTTCCTGAAGGAAAGTTGAAGGAAGAATTTGAGAAGCTTTTCAAGGAATCCAGGGAACTTGTTAGCAATTCCCTTGCTGTTGTGTCACAGGTGTCTTCCTTCTTTAGTGCATTCCAAGGAGCTTCTGATATTCACTTGCCATGGTTGAAAACTGATGCCCCTGCACCTGCTCCTGGTTCTGCTTCTGATCTTGTTCCTGCTCCTGCATCTGCTCCTGGTCCTGTTGCTGATGGTCCTGCTCCTGTTTATGCTCCTGCTTGGCTTAGCCCTCCTGAGTTGGTGGGAACACTTGAGAAACCCACACCTAATGTCACTGTGGCAAAAGATGGCAGTGGAAACTTCAAAACCATCTCTGAAGCTTTGGCAGCTATCCCACAAAACTATGAAGGAAGGTATGTTCTCTCATAA 4116 0.4361 MALSSTLTPTITLIFSLVLFLGLCTPWGAAAPTDIVGLECLKVAPSEFAGSVRTVVGILQDVISILSEFGNGFGDFRLSNAISDCLDLLDLSSDELDWSVSATQTPKGKHNSTGKLSSDLRTWLSAALANPETCMDGFEGTNGMVKGLVSTGLGQMMSLLKELLTQVDPVSDHFMGQSKGEFPWWVKPGERKLLQENGVRVDAVVAADGSGNYTKVMDAVLAAPDYSMERYVIHIKRGVYNENVEIKKKKWNLMMIGDGMDATVISGNRSFIDGWTTFRSATFGENTLLFSFFLSFFSVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECKITGTVDFIFGDATALFQNCQIMAKKGLPNQKNTITAHGRKDPDEPTGFSIQFCNISADSDLLTSVNSTQTYLGRPWKPYSRTIFMQSYISDVLRPEGWLEWNGDFALDTLYYAEYMNYGPGAGLNKRVKWPGYHVMNDSSQASNFTVTQFIEGNLWLPSTGVTFTAGFNASTTLHTKLSSLRSFCSTTPYPEVCFNSLKLSISININPNIINYLLQSLQVAISEATKLSNQFHNAGHSNIIEKQRGAVQDCRELHQSTLASLKRSLSGIRSPNTRNLVDARTYLSAALTNKNTCLEGLDSASGTLKPVLVNSVINTYKHVSNSLSMLSKPGVGAPKGHKNRRLMSAPKWLSRRGRSLLQNSDGEEYDPNEMLVVAADGTGNFSTITDAINFAPNNSMDRVVIYVKEGVYEENVEIPSYKTNIVMLGDGSHVTVITGNRSVVGGWTTFRSATLAVSGDGFLARDIAFENSAGPEKHQAVALRVNADLTAFYRCAIYGYQDTLYVHSFRQFYRECDIYGTIDYIFGNAAVVLQECNIVSRMPLPGQFTVITAQSRDNPDEDTGISIQNCSIIATSDLYSNSSSFKSYLGRPWRVYSRTVYLESYIDDFIDPKGWSKWSNDQGLDTLYYGEYENYGPGSTTDNRVGWLGYHLMDYNDAYNFTVSEFITGDDWLESTSFPYNDDFDLISERRKNEKRQKLKKKIIIGLVSAILLACIISAAAFVVVVNRSGPDTTKNTKHKAPSAPANNAQPQHVDKFSRLVKMICSSAVYKSKCESTLTEALKKDPKLAQPKNLLMVSMILAEAEVNKAFNKTTTLKFASEQEKGAYEDCKQLFEDAKEELGFSITEVGSNDLTKLSTKAPEINNWLSAVMSYQQTCIDGFPEGKLKEEFEKLFKESRELVSNSLAVVSQVSSFFSAFQGASDIHLPWLKTDAPAPAPGSASDLVPAPASAPGPVADGPAPVYAPAWLSPPELVGTLEKPTPNVTVAKDGSGNFKTISEALAAIPQNYEGRYVLS. 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03644 1371 FunFam Pectinesterase 536 688 - -
Seca6g03644 1371 FunFam Pectinesterase 724 1040 - -
Seca6g03644 1371 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 540 688 IPR035513 -
Seca6g03644 1371 ProSitePatterns Pectinesterase signature 1. 227 246 IPR018040 -
Seca6g03644 1371 FunFam Pectinesterase 28 169 - -
Seca6g03644 1371 CDD PMEI-like_4 10 167 - -
Seca6g03644 1371 CDD PMEI-like_3 542 689 - -
Seca6g03644 1371 SUPERFAMILY Pectin lyase-like 200 526 IPR011050 -
Seca6g03644 1371 SMART PMEI_2 1112 1263 IPR006501 GO:0004857
Seca6g03644 1371 SMART PMEI_2 31 170 IPR006501 GO:0004857
Seca6g03644 1371 SMART PMEI_2 535 685 IPR006501 GO:0004857
Seca6g03644 1371 Pfam Plant invertase/pectin methylesterase inhibitor 80 150 IPR006501 GO:0004857
Seca6g03644 1371 Pfam Plant invertase/pectin methylesterase inhibitor 539 685 IPR006501 GO:0004857
Seca6g03644 1371 Pfam Plant invertase/pectin methylesterase inhibitor 1116 1262 IPR006501 GO:0004857
Seca6g03644 1371 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1115 1267 IPR035513 -
Seca6g03644 1371 SUPERFAMILY Pectin lyase-like 729 1037 IPR011050 -
Seca6g03644 1371 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 156 IPR035513 -
Seca6g03644 1371 PANTHER PECTINESTERASE 79 517 - -
Seca6g03644 1371 SUPERFAMILY Pectin lyase-like 1336 1369 IPR011050 -
Seca6g03644 1371 ProSitePatterns Pectinesterase signature 2. 874 883 IPR033131 -
Seca6g03644 1371 Gene3D - 726 1040 IPR012334 -
Seca6g03644 1371 CDD PMEI-like_3 1120 1269 - -
Seca6g03644 1371 Gene3D Invertase/pectin methylesterase inhibitor family protein 536 688 IPR035513 -
Seca6g03644 1371 Pfam Pectinesterase 731 1026 IPR000070 GO:0030599|GO:0042545
Seca6g03644 1371 Pfam Pectinesterase 202 513 IPR000070 GO:0030599|GO:0042545
Seca6g03644 1371 MobiDBLite consensus disorder prediction 1088 1107 - -
Seca6g03644 1371 FunFam Pectinesterase 1113 1268 - -
Seca6g03644 1371 NCBIfam pectinesterase inhibitor domain 534 687 IPR006501 GO:0004857
Seca6g03644 1371 NCBIfam pectinesterase inhibitor domain 1110 1267 IPR006501 GO:0004857
Seca6g03644 1371 Gene3D - 200 529 IPR012334 -
Seca6g03644 1371 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 167 IPR035513 -
Seca6g03644 1371 Gene3D Invertase/pectin methylesterase inhibitor family protein 1114 1268 IPR035513 -
Seca6g03644 1371 Gene3D - 1320 1371 IPR012334 -
Seca6g03644 1371 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Seca6g03644 1371 FunFam Pectinesterase 196 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03644 Seca-Chr6 103678380 103690664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03644 12 527 Carbohydrate Esterase AT3G43270 63.208 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03644 - - gmx:100776969 878.626