Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03639 ATGGATGGTGTCACTGTCAAGCCTGAGCCAGACCAGGTTTTGGCTCTAGAATCTTCTCCTGCTTTGGAGAATCATGGTGATAGTACCAACTTGGAGGAACACCCGGTCCAGCAGAACGTGGGTGATGGGTCAACCATGGATCTCCCTGCAAACAAGTCTATGCCTGCATCTGGACTGAATGCACTGATTCCTAATGCAAATCAGCTTACCATATTCTACAATGGAAGTGTTTGTATCTATGATGGAATTCCTGCAGAAAAGGTGCATGAAATAATGCTTATTGCTGCTGCTGCTGCCAAGTCTACTGAAATGAAGAAGATTGGGATGCAATCTCCTCTCCTTTCTCCTGTTCCCACAAGGCCTTCTTCTCCACATGGAACCGCTAATAATGTTGCTTCAACACAGGCACTCTGCTTTCCAGCAAAGAAGAGTTCCATCTGCAGGCTGCAAGGTGAATTTCCAATAGCACGCAGACATTCACTTCAAAGGTTTCTTGAGAAGCGGCGAGACAGGCTGGGGAGCAAAGCCCCTTATCCTTCCTCACCAACAACAAAAGTGGCTGACAACATAGACAACAACTTCTGTGCTGACAATGCACCAGATTTGGTTTCCATGAAACGATCAGAGGAGGAATTTCAGCCAACAGTCTCTGCCTCTTGA 660 0.4667 MDGVTVKPEPDQVLALESSPALENHGDSTNLEEHPVQQNVGDGSTMDLPANKSMPASGLNALIPNANQLTIFYNGSVCIYDGIPAEKVHEIMLIAAAAAKSTEMKKIGMQSPLLSPVPTRPSSPHGTANNVASTQALCFPAKKSSICRLQGEFPIARRHSLQRFLEKRRDRLGSKAPYPSSPTTKVADNIDNNFCADNAPDLVSMKRSEEEFQPTVSAS. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03639 219 MobiDBLite consensus disorder prediction 172 192 - -
Seca6g03639 219 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Seca6g03639 219 SMART tify_2 62 97 IPR010399 -
Seca6g03639 219 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 49 185 IPR040390 -
Seca6g03639 219 Pfam tify domain 64 96 IPR010399 -
Seca6g03639 219 MobiDBLite consensus disorder prediction 177 191 - -
Seca6g03639 219 Pfam Jas motif 154 178 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03639 Seca-Chr6 103645766 103648991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03639 67 181 Tify Gene Family AT5G20900 54.783 4.47e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca6g03639 tify 1.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03639 K13464 - gmx:100306045 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00547 12 4867528 4871880 Seca6g03639 6 103645766 103648991 PCT