Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03626 ATGGTGCTTGTGAACCTTGGGAGGAAGAAAGAGGGACAGGGAATGCGACTTGGGAAATACGAATTGGGTAGGACTCTTGGTGAAGGCAATTTTGGAAAAGTCAAGTTGGCAAGGGACACAGATTCAGGACAGCTTTTTGCTGTTAAGATCCTTGAAAAGACCAAAATCATTGAGCTCAATAACGCTGATCAGATAAAGAGGGAAATATCCACCTTGAAGCTCCTGAAGCATTCCAACGTCGTTAGATTATACGAGGTCTTGGCTAGCAAAACCAGAATTTATATGGTACTTGAGTACGTGAATGGTGGAGAGTTATTTGACAAAATTGCATCCAAAGGTAAACTTAGTGAAGCTGATGGTAGGAAGATGTTCCAACAATTGATTAATGGTGTGAGCTACTGCCACAATAAGGGTGTCTTCCACAGGGATCTTAAGCTAGAGAATGTGCTTGTGGATGCCAAAGGGAACATAAAGATAACGGATTTTAACCTCAGTGCCTTGCCCCAACATTTTAGGGCAGATGGGTTGCTGCATACAACTTGTGGAAGTCCCAACTATGTTGCCCCTGAGATTCTTGCCAATAGAGGCTATGATGGTGCAACATCAGATATATGGTCATGTGGTGTTATCTTGTATGTTATCCTAACAGGATACCTTCCTTTTGATGACAGAAATCTTGCAGTTCTCTATCAAAAGATTTTCAAAGGAGATGTTCAGATACCAAGATGGTTGTCACCTGGTGCCCAAAACATTATAAAGAGGATTCTTGATCCAAATCCTAAAACCCGGATGACAATGAACATGATCAAAGAAGATGAATGGTTCAGGGAGGGCTATACTCCTGCAATTCCAGATGATGAAGAGGGTGTACACATTGATGATGAAGCCTTTTCCATCCAAGAAGTGCTACCAGAAGCAGAACAGGGTAGTCCAGGATCACCAACACTTATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCTTAGATCTCTCTGGCTTTTTTGAAAAAGAGGATGTATCTGAGAGGAAGATAAGATTTACATCCAACCATTCACCAAAAGATTTGGCAGAGAAGATTGAGGACATTGTAACAGAAATGGGATATAGAGTCCAGAAGAAAAATGGAAAGTTGAAAGTGATTCAAGAGAACAGAGCGCAGAAAAGTCTAGGTAGCCTCTCAGTGGCAGCAGAGGTGTTTGAGATAGGCCCATCTTTGTATGTAGTAGAACTAAGAAAATCTGAGGCTGATATGTATATATATTTTTCTTATGATGTAGTTATGCAAGAAGTTATCAAATGA 1302 0.4071 MVLVNLGRKKEGQGMRLGKYELGRTLGEGNFGKVKLARDTDSGQLFAVKILEKTKIIELNNADQIKREISTLKLLKHSNVVRLYEVLASKTRIYMVLEYVNGGELFDKIASKGKLSEADGRKMFQQLINGVSYCHNKGVFHRDLKLENVLVDAKGNIKITDFNLSALPQHFRADGLLHTTCGSPNYVAPEILANRGYDGATSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDVQIPRWLSPGAQNIIKRILDPNPKTRMTMNMIKEDEWFREGYTPAIPDDEEGVHIDDEAFSIQEVLPEAEQGSPGSPTLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNHSPKDLAEKIEDIVTEMGYRVQKKNGKLKVIQENRAQKSLGSLSVAAEVFEIGPSLYVVELRKSEADMYIYFSYDVVMQEVIK. 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03626 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 414 - -
Seca6g03626 433 Gene3D Transferase(Phosphotransferase) domain 1 11 312 - -
Seca6g03626 433 FunFam Non-specific serine/threonine protein kinase 13 314 - -
Seca6g03626 433 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03626 433 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Seca6g03626 433 SMART serkin_6 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03626 433 ProSiteProfiles Protein kinase domain profile. 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03626 433 Pfam NAF domain 314 373 IPR004041 GO:0007165
Seca6g03626 433 CDD CIPK_C 318 418 - -
Seca6g03626 433 FunFam Non-specific serine/threonine protein kinase 314 425 - -
Seca6g03626 433 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Seca6g03626 433 Gene3D Kinase associated domain 1, KA1 313 429 - -
Seca6g03626 433 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Seca6g03626 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Seca6g03626 433 SUPERFAMILY Protein kinase-like (PK-like) 17 288 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03626 Seca-Chr6 103524598 103529718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03626 83 421 CBL-interacting serine-threonine protein kinases AT3G17510 74.780 9.90e-177 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca6g03626 Pkinase 8.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03626 K07198 - gmx:100815660 703.36