Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03602 ATGAGAATCAACAGTAATGTGGAAGAGTCACAACAGATGGATGCAGAGAATGATTTGTTGCAAGGTTTGGATGATATGACCATTATTGATAAAGAAATTGAAGAAAGTAGTGATGAGGAGGACAATGATCCTTGTGGTGAAACAGATGGTGAAGATAGTGGTGATGGAATGGAACGTGCTAATATGGAAGAAGCTATCAATATAGATAGTTTGCAGGACATTCGAAATTTGGATATGAAGAATATTAGCCCCGAAGATGTCAAGCGGTGTGATTTTGCTAACTTGGACCTTGCATATGAGTTCTATTCTGAATATGCAAAAGTGAACGGATTTTCTGTGAGGAAAAGCAAGGTGATTAAAAACTCTACGAAGGTTATTGTGCAGAAAACTTACCTTTGTCATAGGGAGGGGGAAAGGGATAAAAAGAGGCAAAACAATAAACCTAAGCGTGAAGCAAAACGTAAAACAAGGTGTGGTTGTAAGGCAAGACTTCGAGTCCATGTTGACATCAATTCTGGTCGTTGGTATGTGACAATTTTTGATCATTTACACAACCATGAGATGCTAGGTGAAAGGCTTTGTGCCATGTTGCCAGCCCATAGGAAAATGAGTCCAGCAGATATAATGGAAATGAACAGCTTGAGAAATGTTGGGATAAGCACACCTGATATCTATGTTGCATTTGCAAGTCAATCAGGAGGATACCATAAGATTGGATTTCGAAAAAAAGACTTGTATAATCAGATTGGTAGACAGAGGCGTCTTCGAGCATCTGATGCTATAACAGCTATAGAGTACCTTGAAGGCCTTCGTGCACATGATCCATATTTGTACTACCGGCATACTGTTGATGAAGAAGATAGATTGCAACACCTTTTTTGGTGTGATGGTATTTGTCAAATGAATTACCAACTTTTTGGTGATGTTTTGGCCTTCGATGCGACTTATGGCAAGAACAAATATCGATGTCCATTGGTGGTATTTTCGGGGGTCAATCACCATAACCGTACAACTATTTTTGCTAGTGCAGTTGTTGCTAATGAGACGGAAGACACATATGTGTGGCTGCTTCAAAAATTTAATGAAGTTATGAAAGGAAAGTCACCAAAATCAGTCATTACAGACAGCGATATGGCCATGAGGAATGCAATAAAAAGAGTATTTCCAAATGCTCATCACCGCTTATGTGCTTGGCACTTACTTCGCAATGCCACCAGTAATGTTGGAATTCTTGATTTTATTTCTGATCTAAAGAGGTGCATGTTCAGTAATATTGATGTGGCGAAATTTCAAATCCGATGGGACCAAATGGTGTCTAAATTTGGCTTGGAAGATCATTGTTGGGTGAAAGAGTTATATGAGAAGCGAAAGATGTGGGCCTCAACACATATCAGAGGTAATTTTTTTGCTGGACTAAGAACCACATCTCGATGTGAAAGTCTACATGCTCAACTTGGTAAGTTTGTGAAGTCACGGAATAACCTTACAGAGTTTATTCAACATTTCCAACGTGCCCTTAATTACATGAGATTTAAGGAAGAAGAAGATGACTTTGCCTCTGTTTTTGGTGAGGTTGTGTTGAATAAAGATTACCATCCATTAGAGCGGTCAGCATCTAAGCACTTCACAAGCCAGATTTTTTTAATGTTTCGTAAGGTGTTGGAGAAAACATCTCAGATTATTGTAGTTGGTTGTAGAGAGCCAGTAATGTGCTCCATATACACCATTTCAAAATATCAGGGTGGTGGAAGAGAGTGGTATGTGTCATTTTACTCACCAACTATTGAGTTCACATGCACTTGCCAGAAAATGGAATGCTATGGACTTCCTTGTGAGCACATAATGGCTGTTTTGGTGTATTTAGATGCTACCGAAATCCCAAAGTCTTTAATTCTGGATAGGTGGACCAAGATTGCTAAGGAGTCAATTCGTGGATCTTTCAGTGATGCTTCTTATTTTTGGGACTCTCAATTGATGGCTCGATATGTGTCACTACTTGAGCTATGTAGACAATTGTGCAACCTAGCACATCATGACGATGAAGATTTTAATCATATTAGAGAGATCATAACTTCTGAAATACAAATTCTGAAAGATAAGCATGGTGCACAATTCGCCCAAGAAAATACCGAGTCTCAAATCTTGGATGGTAATTTGCGGAATCCAGCCAATGTAAGGTCGAAAGGGTGTGGAACCAGATCTGGTTCTGGAACTACATGA 2220 0.3914 MRINSNVEESQQMDAENDLLQGLDDMTIIDKEIEESSDEEDNDPCGETDGEDSGDGMERANMEEAINIDSLQDIRNLDMKNISPEDVKRCDFANLDLAYEFYSEYAKVNGFSVRKSKVIKNSTKVIVQKTYLCHREGERDKKRQNNKPKREAKRKTRCGCKARLRVHVDINSGRWYVTIFDHLHNHEMLGERLCAMLPAHRKMSPADIMEMNSLRNVGISTPDIYVAFASQSGGYHKIGFRKKDLYNQIGRQRRLRASDAITAIEYLEGLRAHDPYLYYRHTVDEEDRLQHLFWCDGICQMNYQLFGDVLAFDATYGKNKYRCPLVVFSGVNHHNRTTIFASAVVANETEDTYVWLLQKFNEVMKGKSPKSVITDSDMAMRNAIKRVFPNAHHRLCAWHLLRNATSNVGILDFISDLKRCMFSNIDVAKFQIRWDQMVSKFGLEDHCWVKELYEKRKMWASTHIRGNFFAGLRTTSRCESLHAQLGKFVKSRNNLTEFIQHFQRALNYMRFKEEEDDFASVFGEVVLNKDYHPLERSASKHFTSQIFLMFRKVLEKTSQIIVVGCREPVMCSIYTISKYQGGGREWYVSFYSPTIEFTCTCQKMECYGLPCEHIMAVLVYLDATEIPKSLILDRWTKIAKESIRGSFSDASYFWDSQLMARYVSLLELCRQLCNLAHHDDEDFNHIREIITSEIQILKDKHGAQFAQENTESQILDGNLRNPANVRSKGCGTRSGSGTT. 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03602 739 MobiDBLite consensus disorder prediction 719 739 - -
Seca6g03602 739 MobiDBLite consensus disorder prediction 136 156 - -
Seca6g03602 739 Pfam MULE transposase domain 309 403 IPR018289 -
Seca6g03602 739 MobiDBLite consensus disorder prediction 1 17 - -
Seca6g03602 739 MobiDBLite consensus disorder prediction 31 51 - -
Seca6g03602 739 ProSiteProfiles Zinc finger SWIM-type profile. 591 622 IPR007527 GO:0008270
Seca6g03602 739 Pfam SWIM zinc finger 598 620 IPR007527 GO:0008270
Seca6g03602 739 SMART 26again6 597 624 IPR006564 GO:0008270
Seca6g03602 739 MobiDBLite consensus disorder prediction 1 57 - -
Seca6g03602 739 Pfam FAR1 DNA-binding domain 100 188 IPR004330 -
Seca6g03602 739 PANTHER OS01G0519700 PROTEIN 91 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03602 Seca-Chr6 103309997 103314847 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g03602 MULE 6.5e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03602 - - tpra:123913749 772.696