Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03595 ATGGAACAGTTGAAATTGGCTGCACATTCTGACGCCAAAGAGGATTCTCCTTTTAGGCACAAGCCAAAAAACAACAATGCGCTCGAGTCTTCTGACAGTCTCAGAAATAAAAAGATATCAGCTAGATGGGTTCCAGATGAAGCATGTCGGCCTATAATTGATGAAGCACCTGTGTTTTATCCAACTATTGAAGAGTTTGAAGACACACTTGGTTACATAGCAAGGATACGCCCCCAAGCTGAACCTCATGGCATATGTAGGATCGTCCCTCCACCTTGCTGGGTTCCACCCTGCCCTCTTAAGGAGAAAGATCTATGGGAAAATGCTGAATTTCCCACCCGTATTCAGCAAATTGATTTACTTCAAAATAGGGAACCTATGAGGAAAAAGAGTAGAGGAAGGAAACGAAAACGTAGAAAGAACTCCAAATTGGGCACATGTAGGAGACTTGCCAATTCAGCTTCTGAGGCTAATAATGCTTCTGAATCTGATGAGAAATTTGGATTCCAATCAGGGTCGGATTTCACACTTCAAGACTTCCAGCAATATGCTAACTTTTTTAAGGAATGCTACTTTGGGTTGAAAGATGCCAATGAAGATGGAAGAATTGGTGATAGTGACCACAAGAAGAGATGGGAGCCCTCTGAGGAGGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGAACTTGGAAGTGGTTTTCCTAAGGCATCATCCTTAACTAAGAGTGATTTGGATCAGTATGCCCTGTCTGGCTGGAATCTGAATAACTTCCCGCGATTGCCAGGTTCTGTGCTAAGTTTTGAAGGAAGTGACATCTCAGGAGTTCTAGTGCCATGGCTTTATGTTGGCATGTGTTTTTCTTCATTTTGCTGGCATGTTGAGGATCATCATCTCTATTCACTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGAGTACCAGGAAGCCATGCTTCAGCTTTTGAAAATGCAATGAGGAAGCACTTGCCAGATTTATTTGAAGAACAACCAAATCTACTCAATGAACTGGTTACTCAATTATCTCCTTCAATTCTTAAATCTGAGGGAGTGCCTGTGTATCGCACAGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCAAGGGCATACCACTCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCAGTGAACGTGGCTCCTGTTGATTGGTTAATGCATGGCCAGAATGCTGTCGAGGTTTATAGTTTACAATGCCGGAAGACATCATTGTCACATGACAAGCTGTTATTTGGGTCAGCACTGGAAGCTGTACGAGCCCTTGCAGATCTATCTATTTTAGGAAAGGAAACTACAAAAAATTTGAAATGGAGAAGTGTTTGTGGGAAGGATGGAGTTCTTACTAAGGCAGTTAAGACAAGGATAAAGTTGGAAGAAGAGAGGCTAGACCGTCTTCCAACTTGTTTTAAGTTGCTGAAGATGGAGAATGACTTTGATTTGTGCACGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCCGCTGTAGGTTGTGAGTGCTCTCCTGACAGATTTTCTTGTCTTAAGCATGCTAACTCGTTTTGCTCGTGCAAAATGGATAAAATATTTGTTCTGCTTCGATATACTATAAATGAGCTAAATAAATTGCTGGAAGCATTAGAAGGAGAATCCGCTGCTATTGAGGTGTGGGCAAATAAAAACTTTGGATTGGTTTCTGCCGATGTCAATGAGGTGTGCATAGATAAACCAGATGTCAAGAGAGGCATGTACAAAACCAAGGGTATTGAAGAAGGGGAAAGCTGGACTGGTTGTGCAGGAACCAAGGATAGGTCAAATTTAAATGCAACTAGCTGTCCTTATAGTCATGTTACGTCAGAGTTAGTGCAGTCTGAGTCTCACCTTGCAACTTTTAGTGCATCATATGGAAGTATAGATAGTCATAAAAACAACAATAATTATAATAATAAGATGGCCATAGGCAATGAAGAAAAGGTGGACCAGGCAGGTTCTCTGGATTTGAATCTTGATGTTACATCTGGTGAAAATGAAAATTGTGTTGCTGATAACCATCATATTAAGGGTGTTCCAGTTGGAAAAAAAGAATGCTATTCAGAGGCCAGAAAGGAACAAGACAACGTGGATTTTTCATCATGTTCAAGGGATGTTTGCAATTCTTGTACATTTGGTGGTGGAAAATATGAGGTGGATCTGCAAATGGATTCAGATTCAAGAAAGCAACTCAACTTTTTATTTAAAGAGGAAGTCATAGACACCACAAATACAAGTATATCTTTGACATGCACACAGGAAAGTTGCCTAATGCAAATATTTGGTACTTCTGTTAAGCCTATAAGTTTGGGATCTGTTGTTTATGGAAAGCTGTGGTGCAGTAAGCACTCAATATATCCAAAAGGATTCAAGAGTCGAGTTAAGTTCTTTAGCATTCTTGATCCAACAAGAATCTGTAGCTATATTTCTGAAGTCGTTGATGCTGGATTTCTTGGACCTCTTTTCAAGGTTACCATGGAAGATTGTCCAAGTGAGGCTTTTACAGATACCTCAGCAGAGAAGTGTTGGGAATCAGTTCTAAAGAGACTAAATCATGAAATCATGAGGCGGGGGAGTCTAGGTGAACTAGAACTTCCTCCGTTAGAGTTTCTGAAAAGCATTAACGGTCTTAGAATGTTTGGCTTTCTTTTACCATCCATTATTCAGGCCATCGAAGCTCAAGATCCCAGTCATCAGTGTGTAGAGTACTGGAATCACAAAGTTGTCCCTACATCTTCAGGCAGTGTCATTAGTGACTTTAAGGTCACTAATGGTTCAAGTAGCTCTTTAGATAATGTCGACACCAAAGGTTTTGATAACAATTTGATTGAGCAGGCAAAGGATAACATAGGAGGAAGCTGTCGTTCCCTCGAAGAGATGAAACCAATACTAGAAAGGGCAAGTTCGGATGAGTTAAGCACAATGCTTAAGTTACTCAGCTCTGATGCACAGTGCTCTCAGTGGAGAATGGCATTGCTATCTCTGATGGATGAGACCCAGAAAGCTTGTAGATAA 3132 0.4096 MEQLKLAAHSDAKEDSPFRHKPKNNNALESSDSLRNKKISARWVPDEACRPIIDEAPVFYPTIEEFEDTLGYIARIRPQAEPHGICRIVPPPCWVPPCPLKEKDLWENAEFPTRIQQIDLLQNREPMRKKSRGRKRKRRKNSKLGTCRRLANSASEANNASESDEKFGFQSGSDFTLQDFQQYANFFKECYFGLKDANEDGRIGDSDHKKRWEPSEEEIEGEYWRIIEQPTDEVEVYYGADLETGELGSGFPKASSLTKSDLDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASAFENAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAVEVYSLQCRKTSLSHDKLLFGSALEAVRALADLSILGKETTKNLKWRSVCGKDGVLTKAVKTRIKLEEERLDRLPTCFKLLKMENDFDLCTERECFSCFYDLHLSAVGCECSPDRFSCLKHANSFCSCKMDKIFVLLRYTINELNKLLEALEGESAAIEVWANKNFGLVSADVNEVCIDKPDVKRGMYKTKGIEEGESWTGCAGTKDRSNLNATSCPYSHVTSELVQSESHLATFSASYGSIDSHKNNNNYNNKMAIGNEEKVDQAGSLDLNLDVTSGENENCVADNHHIKGVPVGKKECYSEARKEQDNVDFSSCSRDVCNSCTFGGGKYEVDLQMDSDSRKQLNFLFKEEVIDTTNTSISLTCTQESCLMQIFGTSVKPISLGSVVYGKLWCSKHSIYPKGFKSRVKFFSILDPTRICSYISEVVDAGFLGPLFKVTMEDCPSEAFTDTSAEKCWESVLKRLNHEIMRRGSLGELELPPLEFLKSINGLRMFGFLLPSIIQAIEAQDPSHQCVEYWNHKVVPTSSGSVISDFKVTNGSSSSLDNVDTKGFDNNLIEQAKDNIGGSCRSLEEMKPILERASSDELSTMLKLLSSDAQCSQWRMALLSLMDETQKACR. 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03595 1043 ProSiteProfiles FYR domain FYRC motif profile. 856 946 IPR003889 GO:0005634
Seca6g03595 1043 SMART fyrn_3 810 854 IPR003888 GO:0005634
Seca6g03595 1043 MobiDBLite consensus disorder prediction 121 144 - -
Seca6g03595 1043 SMART cupin_9 264 430 IPR003347 -
Seca6g03595 1043 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Seca6g03595 1043 Pfam jmjN domain 57 90 IPR003349 -
Seca6g03595 1043 SMART fyrc_3 860 952 IPR003889 GO:0005634
Seca6g03595 1043 Pfam F/Y rich C-terminus 858 945 IPR003889 GO:0005634
Seca6g03595 1043 MobiDBLite consensus disorder prediction 1 26 - -
Seca6g03595 1043 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Seca6g03595 1043 Pfam F/Y-rich N-terminus 807 851 IPR003888 GO:0005634
Seca6g03595 1043 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 763 - -
Seca6g03595 1043 MobiDBLite consensus disorder prediction 1 33 - -
Seca6g03595 1043 SUPERFAMILY Clavaminate synthase-like 265 450 - -
Seca6g03595 1043 MobiDBLite consensus disorder prediction 128 144 - -
Seca6g03595 1043 FunFam Putative lysine-specific demethylase JMJ16 802 940 - -
Seca6g03595 1043 Gene3D Cupin 41 414 - -
Seca6g03595 1043 ProSiteProfiles FYR domain FYRN motif profile. 796 854 IPR003888 GO:0005634
Seca6g03595 1043 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Seca6g03595 1043 Gene3D - 801 940 - -
Seca6g03595 1043 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Seca6g03595 1043 SMART JmjN_1 55 96 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03595 Seca-Chr6 103262071 103271833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03595 752 978 JUMONJI Transcription Factor Family AT1G30810 46.256 1.15e-52 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca6g03595 JmjC 1.7e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03595 K11446 - gmx:100801775 1619.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03595 6 103262071 103271833 Seca6g03595 6 103262071 103271833 ECH