Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca6g03577 | ATGAGTTTTTGGGCTACAGTATCGGTTATGACTAATCAATTTATTCCATTCTCTGCCACTATTACTGAATCTGCCATGAAGTCCAAATTGGGCGCCGGATTCCCAAAAATACACTTAAATACAAACAAAGGAAAATTCAGTCTTTCTTTTGCTAGGGACTATTATGAAGTTGGGAGTAATGGTGCAACCAAATCAAGCCGAGAAGTATCTTATTTGCAAACCCAACAAGAGCAAGGAACTTGGGAAGAACCAGATATTGACAGTGGAAGTGACAGTGAGTATGATGATGAAGAAGATGAGCAAGTTGAAGATGAGAACCTTGGATTTGAAAGTGATTGGGAAGAGGAGCAGACCGAAACTTCAGATATTACTGATGTTAATATAACTTCAAGAGGCAAGTATGAGATTGAGGAGAGTATTATTAAGAAAGAGGTTGAACAGCTTTTGGAACCCGAAGAAAGAGCAATATTGCAACAGAACGTAACTCCTAACTTGGAAAAAATATCATCTGCAAAATGGAGCCCACTGCACTCTCTTGCGCTATCAATGCAGATAAGTTGCATGGATAAGCTTCTTGAAAATGGTTTTGATATTGATTCCCTTAATAAGGAAGGTCTCACTGCACTTCATAAAGCAATTATTGGTAAAAAGGAAGCTGTAATAAGCCACCTTTTACGGAAAGGTGCAAGTCCACATGTTAAGGATAAGGATGGAGTTACTCCTCTTCATTATGCAGTTCAAGTTGGTGCCAAGCAAACTGTGAAATTATTGATCAAGTACAAGGTTGATGTCAATGTTGCAGATACTGAAGGTTGGACCCCATTGCATGTTGCCATTCAAAGCAGAAATAGAGATATAGCGAAAATTTTGTTAGTCAATGGTGCAGATAAGACAAGAAAAAATAAGGATGGAAAAACAGCTCTGGATCTAAGCTTATGTTATGGGAAAGACTTCAAGTCTTATGACCTTGCCAGAGTAGTGAAGGTAGTTCCAGCCAACAGAGATCTATTATGA | 1014 | 0.3846 | MSFWATVSVMTNQFIPFSATITESAMKSKLGAGFPKIHLNTNKGKFSLSFARDYYEVGSNGATKSSREVSYLQTQQEQGTWEEPDIDSGSDSEYDDEEDEQVEDENLGFESDWEEEQTETSDITDVNITSRGKYEIEESIIKKEVEQLLEPEERAILQQNVTPNLEKISSAKWSPLHSLALSMQISCMDKLLENGFDIDSLNKEGLTALHKAIIGKKEAVISHLLRKGASPHVKDKDGVTPLHYAVQVGAKQTVKLLIKYKVDVNVADTEGWTPLHVAIQSRNRDIAKILLVNGADKTRKNKDGKTALDLSLCYGKDFKSYDLARVVKVVPANRDLL. | 338 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca6g03577 | 337 | Pfam | Ankyrin repeats (many copies) | 173 | 220 | IPR002110 | GO:0005515 | |
| Seca6g03577 | 337 | ProSiteProfiles | Ankyrin repeat region circular profile. | 270 | 296 | - | - | |
| Seca6g03577 | 337 | ProSiteProfiles | Ankyrin repeat profile. | 237 | 269 | IPR002110 | GO:0005515 | |
| Seca6g03577 | 337 | ProSiteProfiles | Ankyrin repeat region circular profile. | 237 | 268 | - | - | |
| Seca6g03577 | 337 | PANTHER | ANKYRIN REPEAT FAMILY PROTEIN | 143 | 327 | - | - | |
| Seca6g03577 | 337 | MobiDBLite | consensus disorder prediction | 65 | 83 | - | - | |
| Seca6g03577 | 337 | MobiDBLite | consensus disorder prediction | 84 | 121 | - | - | |
| Seca6g03577 | 337 | Gene3D | - | 138 | 240 | IPR036770 | - | |
| Seca6g03577 | 337 | SMART | ANK_2a | 204 | 233 | IPR002110 | GO:0005515 | |
| Seca6g03577 | 337 | SMART | ANK_2a | 270 | 299 | IPR002110 | GO:0005515 | |
| Seca6g03577 | 337 | SMART | ANK_2a | 237 | 266 | IPR002110 | GO:0005515 | |
| Seca6g03577 | 337 | SMART | ANK_2a | 171 | 200 | IPR002110 | GO:0005515 | |
| Seca6g03577 | 337 | ProSiteProfiles | Ankyrin repeat region circular profile. | 204 | 236 | - | - | |
| Seca6g03577 | 337 | ProSiteProfiles | Ankyrin repeat profile. | 204 | 236 | IPR002110 | GO:0005515 | |
| Seca6g03577 | 337 | ProSiteProfiles | Ankyrin repeat profile. | 270 | 302 | IPR002110 | GO:0005515 | |
| Seca6g03577 | 337 | MobiDBLite | consensus disorder prediction | 65 | 121 | - | - | |
| Seca6g03577 | 337 | Pfam | Ankyrin repeats (3 copies) | 237 | 301 | IPR002110 | GO:0005515 | |
| Seca6g03577 | 337 | SUPERFAMILY | Ankyrin repeat | 163 | 315 | IPR036770 | - | |
| Seca6g03577 | 337 | Gene3D | - | 241 | 327 | IPR036770 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca6g03577 | Seca-Chr6 | 103004687 | 103010167 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca6g03577 | 188 | 311 | Ion Channels | AT2G25600 | 28.387 | 9.07e-09 | 55.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca6g03577 | - | - | lja:Lj0g3v0067589.2 | 511.146 |