Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03562 ATGGGTCGTCCAAAGTTAACCTTAAAATGCATCCCAAATGAGAGAGAACGGAACTTAGCTTTCATGAAGAGAAAGAAGGGACTATTGAAGAAAATGTCTGAATTTTCTTCCATGTGTGGAGTTGATGCTTGCTTGATTATCTATTATGGCAATGGTCATGCTCCAACTGTGACTTGGCCTCAAAACCCCACTGAATTGTACTCCATCATTCAGAAGTATGAGCTTGCAAAGAATGAGAAACCTCCTAAGAATTTTGATCTTCAAGACTTTTTCCAAATTAGGAAGAATTTGGTTGAATCTGAGACTTCCAAAGTGAGAAAAGGGATCCTCAAGATTGAATATCCAACTTGGCATCCAAGTCTCAATAGCCTAGGAGAAGGGGAGCTGAGGAGTTTCATTGCTATGTTGGATACTAAGCTTGAAGCTTGTAATCTTAGAATTAACATGTTGAAGAACAAGCATCCATTTGAAGAAGCCAACTTCATTTTCATGCCCAACATCTCTCAAAGCCAACATCTCATTGATTCTATGAAGCCACTCAATGATGGTACTAATCAGCTTGGAAATTCAATAAATCAACTTGATGTGCCAATGTTGATGCCAAAGAATAATGGGATAGTAGATATTGCTAATCAAGTTGATTTGCCTGTGGATTGTTCAAACCAAATTGTTGCCTTTGGAAATTCAACAAATCAAATTGATGGGCCAGTGTTGGTAAATAATGATATGGTGGATATTACTGATCTTGTTGATTTTCCTGTGGATTGTACAAACCAAATTGTTGCCTTTGGAAATTCAATAAATCAAATTAGTGGACCAGTCTTGATGGCAAATAATGATGGGATGGTGGATATTACTAATCATGTTGATGTGTCTGTTAACTATAGAAATCAAATTGGTGCTTTTGGAAATTCAACTAATCAACTTGATGTGCCAGTAGATTGGACTGGTAGTCAACTGAGTGAGGTTGTGGATTGGACTGATCCAGCTAATTGGACTAATCAACTTGGTGTTCCTAGTGATACAACAATGAATGGATCTTCTAATTATGGTACAAATTTTCATGTGTTAGAATTAGAAAAGGATGGAATTAAAGATAAACCAAACTCCTCCTCAATTTGCAATTACAATGGAGGTCAGCCATTAATGCAGCCTTATAACTTTGATCCTACATTGCAGAATATTAGTTCTCAATCTGAGAATGTGCAGCAAGAAGCAGCTCTGCATACCCTGCCATCACCGGTGGATGAATTTCACACAGATGACTACAACAATAAGCTTCAAGCTCAGTTCTTCAACCACATCAATTAG 1311 0.3738 MGRPKLTLKCIPNERERNLAFMKRKKGLLKKMSEFSSMCGVDACLIIYYGNGHAPTVTWPQNPTELYSIIQKYELAKNEKPPKNFDLQDFFQIRKNLVESETSKVRKGILKIEYPTWHPSLNSLGEGELRSFIAMLDTKLEACNLRINMLKNKHPFEEANFIFMPNISQSQHLIDSMKPLNDGTNQLGNSINQLDVPMLMPKNNGIVDIANQVDLPVDCSNQIVAFGNSTNQIDGPVLVNNDMVDITDLVDFPVDCTNQIVAFGNSINQISGPVLMANNDGMVDITNHVDVSVNYRNQIGAFGNSTNQLDVPVDWTGSQLSEVVDWTDPANWTNQLGVPSDTTMNGSSNYGTNFHVLELEKDGIKDKPNSSSICNYNGGQPLMQPYNFDPTLQNISSQSENVQQEAALHTLPSPVDEFHTDDYNNKLQAQFFNHIN. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03562 436 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca6g03562 436 PANTHER MADS BOX PROTEIN 3 141 - -
Seca6g03562 436 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Seca6g03562 436 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca6g03562 436 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca6g03562 436 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Seca6g03562 436 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Seca6g03562 436 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca6g03562 436 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca6g03562 436 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03562 Seca-Chr6 102793246 102794556 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03562 1 141 Type I MADS-box Gene Family AT5G55690 30.405 1.02e-16 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca6g03562 SRF-TF 3.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03562 - - ccaj:109791338 294.664