Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03559 ATGGGTCGTGCAAGAGTAACTTTGAAGCACATCCAAGATGAGAGAGCTCGCAAAATAGCTTTCATGCAGAGAAGAAAAGGACTAATGAAAAAAGTATCCGATTTTTCTACCATGAGTGGAGCTAATGCATGCTTGATAGTGTATGATGGTGATAGTAATGGTGGACCAATGACTTGGCCCCAAGACCTCACACAAGTACACTCCACCCTTGGAAAGTATGAGACTCAAAAGAATGAGAAGCCTCTTAAGACATTTGATCTCCAAGACTTCTTTGACAATAGGAAGGACATGGTGGAAACTGAAATATCCAAAGTGAAGAAAGAGATTATCAATGTCAAGTATCCAACTTGGAATCCAAATTTCAATAACCTAGGAGAGCAGGAGCAGAGGATGTTCATTGCTACTTTGGATGATAAAATTGAAGCTTGTAATCAAAGGATTAACATGTTGAAGAACAAGCAACAACAAAGTCAAGAAGCCAACTCTGGTTTCATGCAGAACATGGCTCAAGAGATTGTTAGCTCTTCAGGTCCAAGCCAACTCAATTTCATACAGAACATCTCTCAAAGCCAACTTCAACTCACCCCTGCTCCTTTGAAGGCACCTTATGATAATAATGAGATGGTGAATTTCACTAATCAAGTTGGTGTGCCTCTGAATTCAAAAAACATGGCTCAAGAGATTAGCTCCTCAGGTCCAAGCCAACTCAATTTCATACAGAACATCTCTCAAAGCCAACTTCAACTCACCCCTGCTCCTTTGAAGGCACCTTATGATAATAATGAGATGGTGAATTTCACTAATCAAGTTGGTGTGCCTCTGAATTCAACAAACATGGCTCAAGAGATTGTTAGCTCCTCAGGTCCAAGCCAACTCAATTTCATGCAGAACATCTCTCAAAGCCAACTTCAACTCACCCCTGCTCCTGTGAAGGCACCTTATGATAATAATGAGATGGTGAATTTCACTAATCAAGTTGGTGTGCCTCTGAATTCAACAAACCAGCTTGTTGAGCCTATTGATTGGGCTAATCCATTGAGTGAGCCTGTGGATTGGGCTAATTACTTTGGTGATGATCTTTTGGGGTCATTGGGGTGGGCCACTCAACTTGATGATCCAGTTTTGCACAATATTCCTTCTCAGTGTCACAATGAGCAGCAAGGAGCATCTTTATTTGCCTTGCCACCACCATTGGATGGACACATGAATAAGAAGCCATAG 1221 0.4144 MGRARVTLKHIQDERARKIAFMQRRKGLMKKVSDFSTMSGANACLIVYDGDSNGGPMTWPQDLTQVHSTLGKYETQKNEKPLKTFDLQDFFDNRKDMVETEISKVKKEIINVKYPTWNPNFNNLGEQEQRMFIATLDDKIEACNQRINMLKNKQQQSQEANSGFMQNMAQEIVSSSGPSQLNFIQNISQSQLQLTPAPLKAPYDNNEMVNFTNQVGVPLNSKNMAQEISSSGPSQLNFIQNISQSQLQLTPAPLKAPYDNNEMVNFTNQVGVPLNSTNMAQEIVSSSGPSQLNFMQNISQSQLQLTPAPVKAPYDNNEMVNFTNQVGVPLNSTNQLVEPIDWANPLSEPVDWANYFGDDLLGSLGWATQLDDPVLHNIPSQCHNEQQGASLFALPPPLDGHMNKKP. 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03559 406 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Seca6g03559 406 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca6g03559 406 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca6g03559 406 CDD MADS_SRF_like 2 65 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca6g03559 406 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Seca6g03559 406 PANTHER MADS BOX PROTEIN 3 147 - -
Seca6g03559 406 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Seca6g03559 406 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 59 IPR002100 GO:0003677|GO:0046983
Seca6g03559 406 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Seca6g03559 406 Coils Coil 133 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03559 Seca-Chr6 102763198 102764418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03559 1 146 Type I MADS-box Gene Family AT5G55690 30.921 8.30e-19 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca6g03559 SRF-TF 3.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03559 - - ccaj:109809010 283.108