Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03558 ATGAGGCAGAAGGGTGATGCAATGAAGCAGCCTTTTGATCCTTCATCTTTGGGTCCTTCCAAGATACCATCTGTAAATATACCTAGAAAATCAGGGGGCAGTGCATGGGAGGTTTTATCCGGATCTGATTCCTACCATGCCTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTTCTTCCGCATGAAAAATTGAATATAAATGGCACTGAAAACGGTTATCAATCTGTTGATGACATTTCATCTGACTTTAAAAAGCTCCATCAAGAGGGAAATGATTCCCTTGAAGATGGTCATACTCATGCAATTGGAACCATGCTTCCTGATGACGAGGAGGAGCTTTTAGCTGGCATCATGGATGATTTCGACCTAAGTGGTTTGCCTGGTTCCCTTGAGGATTTGGAAGAGTATGATCTTTTTGGTAGTGGTGGAGGTATGGAACTAGAAACTGATCCACAGGAAAGTCTAAGTGTGGGTATATCTAAGTTAAACTTCTCTGATAGTTCTGCTGGCAATGGTTTGCCACAATACTCTTTCCCTAATGGTGTGGGAACTATTGCTGGAGAACATCCATATGGAGAGCATCCTTCCCGAACTTTATTTGTTCGAAATATTAACAGTAACGTAGAGGATTCAGAGCTAAGAGCTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTATTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTGCAAAACAAACCTCTGCGGCGCAGGAAACTTGACATTCACTTCTCAATTCCAAAGGATAATCCATCAGACAAGGATATCAACCAAGGAACTCTGGTAGTTTTCAATTTGGATCCATCTGTTTCAAACGAAGACCTCCGTCAAATATTTGGAGCTTATGGAGAGGTCAAAGAGATAAGGGAAACGCCTCACAAGAGGCATCATAAGTTTATTGAATTTTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCATTAAATAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTCGTCGAAATTTGATGCTCCAACTAAACCAAGAGCTTGACCAAGATGAATCTCGGAGTTTTAGATATCAAGTGGGTTCACCTGTTGCTAACTCTCCGCCAGGTAACTGGTTACAGTTTAACAGCCCTGTTGAGCAGAATTCAATGCAAACTATCAATCATTCTCCTGGTTCTAGGATCATGAGCCCAACAACAGGCAATCATTTACCAGGATTAGCTTCAATTTTGCAACCACAGGTATCAAACACTGTGAAGGCTGCAACTATTGGCAAGGACTTAGGAAGGAGTAATCATGGAGAGCACATATTCAACAGTATGAATTCATCACATGGAGCTACTTTTCAGTCTCATTCACTTCCAGAGCCAAAATTTAGCCAATATCGTGGAGCTTTGTCCTCTTTTGGTCCATCAACATCAAATGGATCCTCAGTAGAAACCTTGTCTGGGCCACAGTTTTTATGGGGAAGTCCAACCCTCTACTCTGAGCATACTAAACCTTCAGCTTGGCCAAGACCATCTGTGGGGAATCCATTTACATCGAATGGAAAGAGCCATGCCTTCCCATACTCAAATCAAAATAGTTCTTTTGTCAGTTCTTCACAACAGCAGCATGTTGGCTCTGCTCCATCAGGTTTGCCTTTTGAGAGGCACTTTGGTTTTCTTCCTGAGTCACCTGATACTTCATTCATGAATAATGTTAGTTATGGAGGCATGGGTCTGGGGCACAATGATGGAAATTACATGGTTAATGTGGGTGGATCTGTTAATACTGGTATTTCTATACCAAGAAATATGCCTGATAATGGTTCATCAAACTTCAGAATGAGATCTTCTCCTAGGCTTAGCCCTGTATTTTTGGGTAATGGTCCTTATCCAGGATTCCCACCTACTGCCATGGAGAGTTTGACTGATCGTGCTCGGAGTAGATGGATGGAGAACAATGGAAGCCAAGTCGACAACAAGAAGCAATTTCAGCTTGACTTGGATAAGATTAAAAGCGGTGAAGATACAAGGACTACATTAATGATAAAGAATATCCCAAATAAGTATGATTAA 2133 0.4177 MRQKGDAMKQPFDPSSLGPSKIPSVNIPRKSGGSAWEVLSGSDSYHASSDASLFSSSLPVLPHEKLNINGTENGYQSVDDISSDFKKLHQEGNDSLEDGHTHAIGTMLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESLSVGISKLNFSDSSAGNGLPQYSFPNGVGTIAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQTINHSPGSRIMSPTTGNHLPGLASILQPQVSNTVKAATIGKDLGRSNHGEHIFNSMNSSHGATFQSHSLPEPKFSQYRGALSSFGPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAWPRPSVGNPFTSNGKSHAFPYSNQNSSFVSSSQQQHVGSAPSGLPFERHFGFLPESPDTSFMNNVSYGGMGLGHNDGNYMVNVGGSVNTGISIPRNMPDNGSSNFRMRSSPRLSPVFLGNGPYPGFPPTAMESLTDRARSRWMENNGSQVDNKKQFQLDLDKIKSGEDTRTTLMIKNIPNKYD. 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03558 710 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Seca6g03558 710 CDD RRM1_MEI2_like 198 274 IPR034453 -
Seca6g03558 710 FunFam Protein MEI2-like 1 283 378 - -
Seca6g03558 710 Gene3D - 188 282 IPR012677 -
Seca6g03558 710 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Seca6g03558 710 PANTHER RNA RECOGNITION MOTIF-CONTAINING 43 708 - -
Seca6g03558 710 SMART rrm1_1 200 268 IPR000504 GO:0003723
Seca6g03558 710 SMART rrm1_1 285 353 IPR000504 GO:0003723
Seca6g03558 710 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Seca6g03558 710 Gene3D - 283 382 IPR012677 -
Seca6g03558 710 MobiDBLite consensus disorder prediction 1 33 - -
Seca6g03558 710 CDD RRM2_MEI2_like 283 353 - -
Seca6g03558 710 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Seca6g03558 710 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Seca6g03558 710 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03558 Seca-Chr6 102749039 102755550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03558 194 392 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 7.07e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03558 - - gmx:100800877 1262.67