Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03552 ATGACGTCACGTTCCGGCGCCGGCGGCGGAAGCGGAAGCGCCAGGACCCGAGTGGGGAAGTATGAACTAGGTAGGACCCTTGGCGAGGGCAATTTCGCGAAGGTGAAGTTTGCGAGGCATGTGGAAACTGGAGAACATATGGCCATCAAAATTCTTGACAAGGAAAAAGTTCTCAAGCACAAAATGATTGGTCAGATAAAGCGAGAAATATCAACAATGAAACTGATTAGACACCCAAATGTCATACGCATGTATGAGGTGATGGCTAGCAAGACAAAGATATATATTGTATTGGAATTTGTGACTGGTGGGGAGTTGTTTGATAAAATTGCACGCAATGGAAAGTTGAAAGAAGATGAAGCAAGAAAATATTTTCAACAGCTTATATGTGCTGTGGATTACTGTCATAGTAGGGGTGTTTTCCATAGAGACCTAAAGCCTGAGAATTTGTTGCTGGATGCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGGCTACTTCACACAACATGCGGTACGCCAAATTATGTTGCTCCAGAGGTGATCCACAACAAAGGCTATGATGGTGCAAAGGCAGATCTCTGGTCATGTGGTGTTATTCTATTTGTTTTAATGGCTGGCTATTTGCCCTTCGAAGAAAACAATCTTATGGCTTTATATAAAAAGATTTTCAAGGCCGAGTTCACATGTCCCCCATGGTTCTCTTCAAGTGCAAAGAAACTAATCAAAAGAATCCTTGATCCCAATCCTTCCACACGGATTACAATTTCTGAGGTCATTGAGAATGAGTGGTTCAAAAAGGGATATAAGCCTCCTGTGTTTGAACAGGCCAATGTTAGTCTTGATGATGTAAATTCTATTTTTGGTGAAGCTACGGATTCACAAAATCTTGTTGTTGAGAGGCGTGAAGAGGGGCATGTGGGTGTGGCACCAACAACCATGAATGCATTTGAGCTTATCTCTAAATCTCAGGGCCTCAACCTTAGCAGTCTTTTCGAAAAGCAAATGGGACTTGTTAAAAGGGAAACAAGGTTCACATCCAAATGTTCAGCAGATGAGATTATTTCAAAAATTGAGCAAGCTGCAGGACCTCTGGGTTTTGATGTTAAGAAGAACAACTGTAAGTTAAAGATTCAAGGGGAAAAGACTGGACGAAAAGGTCATCTATCTGTAGCCACTGAGATCTTGGAGGTGGCCCCTTCACTTTACATGGTTGAGCTGCGTAAGTCTGAAGGAGATACTCTGGAATTTCACAAGGTAAGTTTAATGCACAATTTAATGTGTATATGTTTGTATATGGGAGTAAAATTAATTGCTCTACATTATTATGAGTTGTGTTTTACCCAGTAA 1383 0.4129 MTSRSGAGGGSGSARTRVGKYELGRTLGEGNFAKVKFARHVETGEHMAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIARNGKLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEENNLMALYKKIFKAEFTCPPWFSSSAKKLIKRILDPNPSTRITISEVIENEWFKKGYKPPVFEQANVSLDDVNSIFGEATDSQNLVVERREEGHVGVAPTTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSADEIISKIEQAAGPLGFDVKKNNCKLKIQGEKTGRKGHLSVATEILEVAPSLYMVELRKSEGDTLEFHKVSLMHNLMCICLYMGVKLIALHYYELCFTQ. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03552 460 Gene3D Phosphorylase Kinase; domain 1 11 100 - -
Seca6g03552 460 ProSiteProfiles NAF domain profile. 320 344 IPR018451 GO:0007165
Seca6g03552 460 FunFam Non-specific serine/threonine protein kinase 12 100 - -
Seca6g03552 460 CDD CIPK_C 326 431 - -
Seca6g03552 460 SUPERFAMILY Protein kinase-like (PK-like) 18 292 IPR011009 -
Seca6g03552 460 Gene3D Kinase associated domain 1, KA1 320 442 - -
Seca6g03552 460 SMART serkin_6 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03552 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Seca6g03552 460 Pfam NAF domain 322 382 IPR004041 GO:0007165
Seca6g03552 460 Gene3D Transferase(Phosphotransferase) domain 1 101 283 - -
Seca6g03552 460 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Seca6g03552 460 FunFam Non-specific serine/threonine protein kinase 14 316 - -
Seca6g03552 460 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 18 430 - -
Seca6g03552 460 FunFam Non-specific serine/threonine protein kinase 319 442 - -
Seca6g03552 460 Pfam Protein kinase domain 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03552 460 CDD STKc_SnRK3 20 275 - -
Seca6g03552 460 ProSiteProfiles Protein kinase domain profile. 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03552 Seca-Chr6 102705198 102712479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03552 10 431 CBL-interacting serine-threonine protein kinases AT1G01140 69.811 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca6g03552 Pkinase 3.3e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03552 - - gmx:100788746 783.482