Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03546 ATGGCTTACGCTGCGATGAAACCTACTAAGCCCGGTTTGGAGGAGTCTCAAGAACAGATACATAAGATTAGGATCACTCTCTCATCCAAGAACGTCAAGAATCTCGAGAAAGTTTGCACCGACTTGATCCGTGGTGCCAAGGACAAGCGCCTTAGGGTCAAGGGTCCTGTTAGGATGCCAACTAAAGTTCTTCACATTACCACCAGGAAATCCCCCTGTGGAGAAGATTTGAGCTGCGTGTGCACAAAAGTCATTGACCTCTACAGTTCCCCTGATGTGGTCATGCAGATTACCTCAATCACAATTGAACCTGTTTGCACTGACTTGATCCGTGGTGCCAAGGACAAGCGCCTTAGGGTCAAGGGTCCTGTTAGGATGCCAACTAAAGTTCTTCACATTACAACCAGGAAATCCCCCTGTGGAGAAGGACTCTTCCATGTTCTCATCGTCGTCTACGAAATCGCTGTTGTCATCGTTCTGGTATTTTCCAACAATCTCAAACGTCCTTCTCTGATTAAGATGGTGGTGTCCTTGGGAAATGGACCATGGGATCAGCTATTTGGTGAAGGAAACTCTCCAGCCTTTGCTGTGGCTACTGTCGCAACCCTTGTAAGTGAACACATAGTTGTCTTGGCTATTCCCTGA 645 0.4729 MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLIRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEDLSCVCTKVIDLYSSPDVVMQITSITIEPVCTDLIRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGLFHVLIVVYEIAVVIVLVFSNNLKRPSLIKMVVSLGNGPWDQLFGEGNSPAFAVATVATLVSEHIVVLAIP. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03546 214 SUPERFAMILY Ribosomal protein S10 101 143 IPR036838 -
Seca6g03546 214 SUPERFAMILY Ribosomal protein S10 22 100 IPR036838 -
Seca6g03546 214 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 102 142 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca6g03546 214 Hamap 30S ribosomal protein S10 [rpsJ]. 20 130 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca6g03546 214 Gene3D Ribosomal protein S10 domain 7 103 IPR036838 -
Seca6g03546 214 Gene3D Ribosomal protein S10 domain 104 146 IPR036838 -
Seca6g03546 214 SMART Ribosomal_S10_2 24 107 IPR027486 -
Seca6g03546 214 ProSitePatterns Ribosomal protein S10 signature. 46 61 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca6g03546 214 ProSitePatterns Ribosomal protein S10 signature. 113 128 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca6g03546 214 PRINTS Ribosomal protein S10 family signature 57 72 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca6g03546 214 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca6g03546 214 Pfam Ribosomal protein S10p/S20e 24 75 IPR027486 -
Seca6g03546 214 Pfam Ribosomal protein S10p/S20e 102 142 IPR027486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03546 Seca-Chr6 102637451 102644433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03546 101 182 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 52.439 5.06e-21 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03546 K02969 - cit:102621376 179.874