Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03545 ATGGGGAAGAAAAAGAAGCAAGTAGGAGAAACAAGTGAAGATAGGAGCCCAAAAGCATATGATAATGATACTATGGTATTTATATCCATGGCTCAAGAGTTGAAGGATGAAGGGAACAAGCTGTTCCAAAAGCGGGATGCTAAAGGAGCTATGGTAAAATATGAGAAAGCCCTCAAATTGCTTCCAAGGAATCATATAGATGTGTCCTATCTGCGGAGTAACATGGCTGCATGCTATATGCAGATGGGACTCAGTGAATACCCTAGGGCAATTCATGAATGCAATTTGGCTCTTGAAGTAACACCAAAATACAGTAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGATGCTTTAAATAGGCTGGATTTAGCACTGAGAGATGTTAGTACTGTTTTAAAGATAGAGCCAAATAATATCATGGCGTTGGAGATCTCAGATAAGGTGAAACATGCACTTGAAGATAAAGGATTAAGAGTAAATGATACAGAAATTGAGTTGCCTCTGGATTATGTTGAACCTCCTTATGCTTTGCCTCCCAAAACAGTAGTGAAAGAAAAGAAACGCAAGAAGAAGAGCAACAAAGCAAAGGTGAAGACTTCCGATGAAATTGTAGAAAAGCATGCTGAGGAGAAATTAGAAGAGAAGAAAGCTGAGGAAAGTATTGTAGTAAAGAAGGCTGAGGACAGTGTGAAAGAGAAGGCTAACACATCTAAAAAGAAGAAGACCAAGGAAAAAATTGATAAGGAAAAGGATGATGTTAAGGAGGTCAATGAGGAAAAAAGTAATGGAAGAAGTGAAGATATACCTAAGAAAACAGCAAAACTTGTTTTTGGTGAGGATATTAGATGGGCTGAATTGCCAGTTAATTGCAGCCCCTTTCAGCTAAGACAAGTTATTTGTAACCGGTTCCCAAGCCTAGGAGCAATTCTTGTCAAATATAGAGACCAAGAAGGTGATTTGGTCACAATCACTTCTGATGAAGAATTAAGGTGGGCTGAAACAGGATCGCAGGGTTCTATCCGGCTGTACATAGTAGAAACTAATCCTGTTCAGGATCCATTCTATGAGAAACTTCATGTGAAGGATGAGGAAAAGGTTATCATTGATAATACTCCTAAGAATGGTCGCGTGGTGAAAGCAAAGGAGATTGTTTGCTCATCTTGCATTGAGGATTGGATAATTCAGTTTGCTCAACTATTCAAGAACCATGTTGGATTTGAATCTGACAGATATTTAGATTTTCATGAACTTGGGATGAAGCTTTATTCAGAGGCTGTGGAGGAGACAGTTACAAGTGAAGAAGCACAAGGCCTATTTGACATGGCAGGAGGTAAGTTCCAAGAGATGGCAGCTCTAGCACTGTTCAACTGGGGAAATGTGCATATGTCCAGGGCAAGGAAGAAAGTGTATTTCACAGAAGATTCTTCTAAAGAGAATATATATGAACAAATCAAAAGTTCATATGAATGGGCACAGAAAGAATATGCAAAAGCTGGAGATAAATATGAAGCAGCCATTAAAATTAAGTCAGATTTTTATGAAGGCTTCCTAGCACTAGGCCAGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATTATGCACTCAGTAGTAATGTAGATTTAGCAACATGGCCCTCCACTGAGGTTCTTCAGCTTTACAACAGTGCTGAGGATAACATGGAGAAAGGAATGATGATATGGGAAGAATCAGAAGGGCAACAGTTGACTGAAACCTCCAATCCGAAGGATACTAGATTGCATTTGCAGAAGATGGGGTTGGATGGGCTATTTAAAAATATGTCATCAAAGGAAATTGCTGCACTGGCAGCAAACATGAGGTCTCAAATAAATCTCCTGTGGGGTACCATGTTATATGAACGCTCAATTGTGGAATTCAAATTAGGGCTACCGGTGTGGCATGAATGTCTGGAAGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTGATGTTGAAAAACCACTGTTCAAATAACACTGCTGCAGATGGTCTAGGTTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTTGCAGAAAGGAGTTCCATCATTTCGTTTGGAACCCTTGTTTAGAAGAAGAGTATCAAAAATTTATCATGCCTTTGAGCTTGTATGA 2175 0.394 MGKKKKQVGETSEDRSPKAYDNDTMVFISMAQELKDEGNKLFQKRDAKGAMVKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPKYSKALLKRARCYDALNRLDLALRDVSTVLKIEPNNIMALEISDKVKHALEDKGLRVNDTEIELPLDYVEPPYALPPKTVVKEKKRKKKSNKAKVKTSDEIVEKHAEEKLEEKKAEESIVVKKAEDSVKEKANTSKKKKTKEKIDKEKDDVKEVNEEKSNGRSEDIPKKTAKLVFGEDIRWAELPVNCSPFQLRQVICNRFPSLGAILVKYRDQEGDLVTITSDEELRWAETGSQGSIRLYIVETNPVQDPFYEKLHVKDEEKVIIDNTPKNGRVVKAKEIVCSSCIEDWIIQFAQLFKNHVGFESDRYLDFHELGMKLYSEAVEETVTSEEAQGLFDMAGGKFQEMAALALFNWGNVHMSRARKKVYFTEDSSKENIYEQIKSSYEWAQKEYAKAGDKYEAAIKIKSDFYEGFLALGQQQFEQAKLSWYYALSSNVDLATWPSTEVLQLYNSAEDNMEKGMMIWEESEGQQLTETSNPKDTRLHLQKMGLDGLFKNMSSKEIAALAANMRSQINLLWGTMLYERSIVEFKLGLPVWHECLEVAVEKFELAGASPTDIAVMLKNHCSNNTAADGLGFKIDEIVQAWNEMYEAKKLQKGVPSFRLEPLFRRRVSKIYHAFELV. 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03545 724 MobiDBLite consensus disorder prediction 227 266 - -
Seca6g03545 724 SUPERFAMILY CAD & PB1 domains 271 356 - -
Seca6g03545 724 SMART tpr_5 31 64 IPR019734 GO:0005515
Seca6g03545 724 SMART tpr_5 105 138 IPR019734 GO:0005515
Seca6g03545 724 SMART tpr_5 69 104 IPR019734 GO:0005515
Seca6g03545 724 MobiDBLite consensus disorder prediction 1 20 - -
Seca6g03545 724 PANTHER PROTEIN CLMP1 9 722 IPR044517 -
Seca6g03545 724 ProSiteProfiles TPR repeat profile. 31 64 IPR019734 GO:0005515
Seca6g03545 724 Gene3D Tetratricopeptide repeat domain 28 157 IPR011990 GO:0005515
Seca6g03545 724 Pfam PB1 domain 272 345 IPR000270 GO:0005515
Seca6g03545 724 Gene3D - 266 347 - -
Seca6g03545 724 SUPERFAMILY TPR-like 29 145 IPR011990 GO:0005515
Seca6g03545 724 Coils Coil 239 266 - -
Seca6g03545 724 CDD PB1 274 344 - -
Seca6g03545 724 MobiDBLite consensus disorder prediction 181 201 - -
Seca6g03545 724 ProSiteProfiles TPR repeat profile. 105 138 IPR019734 GO:0005515
Seca6g03545 724 Coils Coil 209 229 - -
Seca6g03545 724 SMART PB1_new 270 347 IPR000270 GO:0005515
Seca6g03545 724 ProSiteProfiles PB1 domain profile. 270 347 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03545 Seca-Chr6 102631469 102635316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03545 14 138 Calmodulin-binding Proteins AT3G25230 33.094 1.94e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03545 K26538 - gmx:100820306 1125.54