Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03536 ATGAGATTGACACTTTCAGATATCAAATTAGCCATAATGGGGTTTAATAGAGATAGACTTGTTGGGGAAGGTGCAACAACTAAGGTTTATAAAGGGTCTCTTCCATTTGGTGGTGATGTGGCAGTGAAAAGATTTGAGAGAGTTGATGCTTTAGATTGCCTACACAATCCTTTCGCCACTGAGTTTCATACAATGGTGGGTTACTTGAGGCACAAAAACTTGGTTCAGCTTAAGGGATGGTGTTGTGAGGGGAATGAGTTATAG 264 0.4053 MRLTLSDIKLAIMGFNRDRLVGEGATTKVYKGSLPFGGDVAVKRFERVDALDCLHNPFATEFHTMVGYLRHKNLVQLKGWCCEGNEL. 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03536 87 Pfam Protein tyrosine and serine/threonine kinase 18 85 IPR001245 GO:0004672|GO:0006468
Seca6g03536 87 FunFam L-type lectin-domain containing receptor kinase S.6 1 87 - -
Seca6g03536 87 SUPERFAMILY Protein kinase-like (PK-like) 5 86 IPR011009 -
Seca6g03536 87 ProSiteProfiles Protein kinase domain profile. 15 87 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03536 87 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Seca6g03536 87 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03536 Seca-Chr6 102553338 102553601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03536 2 86 Receptor kinase-like Gene Family AT5G42120 60.000 1.05e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca6g03536 PK_Tyr_Ser-Thr 4.2e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03536 - - gmx:100783805 160.614