Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03532 ATGGCTTACGCTGCGATGAAACCTACTAAGCCCGGTTTGGAGGAGTCTCAAGAACAGATACATAAGATTAGGATCACTCTCTCATCCAAGAACGTCAAGAATCTCGAGAAAGTTTGCACCGACTTGATCCGTGGTGCCAAGGACAAGCGCCTTAGGGTCAAGGGTCCTGTTAGGATGCCAACTAAAGTTCTTCACATTACCACCAGGAAATCCCCCTGTGGAGAAGGTAATTCTTTTTTGGTTTCAACATATAATAGTACCAACACATGGGACAGATTTGAGCTGCGTGTGCACAAGAGAGTCATTGACCTCTACAGTTCCCCTGATGTGGTCAAGCAGATTACCTCAATCACAATTGAACCTGGTGTGGAGGTTGAGGTTACCATTGCTGATGCTTGA 399 0.4586 MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLIRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGNSFLVSTYNSTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03532 132 Hamap 30S ribosomal protein S10 [rpsJ]. 20 129 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca6g03532 132 FunFam 40S ribosomal protein S20 7 131 - -
Seca6g03532 132 NCBIfam 30S ribosomal protein S10 21 129 IPR005729 GO:0003735|GO:0006412|GO:0015935
Seca6g03532 132 SUPERFAMILY Ribosomal protein S10 22 129 IPR036838 -
Seca6g03532 132 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 14 131 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca6g03532 132 Gene3D Ribosomal protein S10 domain 6 131 IPR036838 -
Seca6g03532 132 Pfam Ribosomal protein S10p/S20e 24 128 IPR027486 -
Seca6g03532 132 PRINTS Ribosomal protein S10 family signature 89 103 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca6g03532 132 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca6g03532 132 SMART Ribosomal_S10_2 24 128 IPR027486 -
Seca6g03532 132 ProSitePatterns Ribosomal protein S10 signature. 46 61 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03532 Seca-Chr6 102460113 102461741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03532 1 132 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 84.091 1.86e-76 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03532 K02969 - cit:102621376 232.646