Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03523 ATGTGTGTTCAGGATGCAGAGCAAGTTGCCCCAAATGAGGATAACAACAGAGGGAAGTCTTGGCCTTTGTATGGTGAGCTTTTGCTTACCCAGATGGACAATTGGGAAAAAGGACCTTCTTTCACTGACAGGATGAGTGTTCAAAGTTCTTTCCCTCTGGAAAGCATATGCGAGGACACTGTGATTGCTGACAAGAAACAGAACCTGATGAATTTTGTCCCTGCAATTCGCTCTGGAGAGTGGTCTGATATTGGAGAACGCCCTTACATGGAGGATACTCACATATGCATTGAAGATTTGGCAAAGAAGTTTAATTACAACGTACTTCCTGAGGAAGCTGTTTCCTTTTATGGTGTGTTTGATGGGCATGGAGGGAAAAGTGCTGCACAATTTGTCCGTGATCATCTGCCAAGAGTTATTGTTGAGGATGTTAACTTTCCTTTGGATCTTGAGAAGGTGGTCAAAAGGTCATTTTTTGAGACTGATGCTGCATTTTTAAAAAGATCCTCTCTTGAGTCTTCCCTTTCTTCTGGTACAACTGCACTAACTGCAATCATAATTGGAAGGTCTTTACTTGTAGCTAATGCTGGAGACTGCAGGGCTGTCTTGTCCCGTCAAGGAAGGGCTATAGAAATGTCCAAAGATCATAGGCCAAACTGCATCAAAGAAAGGAAGCGGATTGAGTCACTGGGTGGATTCATTGATGATGGTTACCTGAATGGCCAATTAGGTGTCACTCGTGCTCTAGGTGACTGGCACCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGTGGACCACTGAGTGCTGAACCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGCTAGTGATGGAATTTGGGATGTTTTTAGTAGCCAAAATGCTGTAGATTTTGCTAGGAGGAGGCTTCAAGAGCATAATGATGAGCAACTATGCTGCAAGGAAATGGTGCAGGAAGCAATCAAGAGAGGATCAACAGACAACTTGACAGTTGTAATGGTGTGTTTTAACTCAGAACCACCACCACCTGTGGTTGTAGAAAGAGCACGTGTAAGGAGAAGCATATCTGCAGAGGGACTTCAGAATCTTAAATGCCTGCTAGAAGGGTAG 1128 0.4309 MCVQDAEQVAPNEDNNRGKSWPLYGELLLTQMDNWEKGPSFTDRMSVQSSFPLESICEDTVIADKKQNLMNFVPAIRSGEWSDIGERPYMEDTHICIEDLAKKFNYNVLPEEAVSFYGVFDGHGGKSAAQFVRDHLPRVIVEDVNFPLDLEKVVKRSFFETDAAFLKRSSLESSLSSGTTALTAIIIGRSLLVANAGDCRAVLSRQGRAIEMSKDHRPNCIKERKRIESLGGFIDDGYLNGQLGVTRALGDWHLEGMKEMSERGGPLSAEPELKLMTLTKEDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEQLCCKEMVQEAIKRGSTDNLTVVMVCFNSEPPPPVVVERARVRRSISAEGLQNLKCLLEG. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03523 375 Gene3D - 60 346 IPR036457 -
Seca6g03523 375 Pfam Protein phosphatase 2C 89 334 IPR001932 -
Seca6g03523 375 ProSiteProfiles PPM-type phosphatase domain profile. 77 342 IPR001932 -
Seca6g03523 375 SUPERFAMILY PP2C-like 69 344 IPR036457 -
Seca6g03523 375 CDD PP2Cc 76 342 IPR001932 -
Seca6g03523 375 PANTHER PROTEIN PHOSPHATASE 2C 66 340 IPR015655 GO:0004722|GO:0006470
Seca6g03523 375 SMART PP2C_4 67 340 IPR001932 -
Seca6g03523 375 FunFam Probable protein phosphatase 2C 22 60 345 - -
Seca6g03523 375 ProSitePatterns PPM-type phosphatase domain signature. 116 124 IPR000222 GO:0043169
Seca6g03523 375 SMART PP2C_SIG_2 92 342 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03523 Seca-Chr6 102393697 102397007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03523 66 375 PP2C-type Phosphatase Gene Family AT2G25620 60.828 8.84e-136 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Seca6g03523 PP2C 6.4e-72 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03523 K14803 - gmx:100813157 586.26