Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03521 ATGCTTAGTCGATTGCATCACCGTAACCTTGTAAAACTGGTGGGATACTACAGTAATCATGACTCATCACAAAATCTACTTTGCTATGAGCTTGTCCCTAATGGAAGTTTGGAAGCTTGGCTTCATTGTCCCTTGGGAATAAATTGTCCTTTGGATTGGGACACCAGAATAAAAATTGCTCTTGATGTTGCAAGAGGACTTTCATACCTGCATGAAGACTCACAGCCCTGTGTAATACACAAAGATTTCAAGGCGTCCAACATATTGCTTGAGAACAATTTTCATGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAGGCACCTGAAGGCAGATCTAATTATTTGTCTACTCGTGTCATGGGCACATTTGGGTATGAAGCTCCTGAGTATGCCATGACTGGGCACCTACTTGTTAAAAGTGATGTTTATAGCTATGGGGTTGTCTTGCAAGAACTACTTACTGGAAGGAAATATGTTACAGCCAAAGACAAGGACCGACTGGAAGAGATCGCTGATCCCAAACTTGGGGGAAAGTATCCAAAGGAAGATTTTGTTCGTGTGTGCATTATTGCTGCAGCATGTGTTGCTCCTGAAGCAAGCCAACGACCCACAATGGGTGAAGTGGTACAGTCACTTAAAATGGTGCAACGCATCACAGAATATCAAGATTCTATGTTAGCCTCATCCAATACACGACCAAACCTGAGACAGTCCTCTAGCACTTTTGAGTTTGACGGAACATCTTCAATGTTCTCCTCATGTCTTTACTCTGGTCTAAGTGCTGCCTTTGACAATGAGAACATTTCTAGGATGGTGGTTTTCTCTGAAGATCTTCATGAAGGACGATGA 849 0.4252 MLSRLHHRNLVKLVGYYSNHDSSQNLLCYELVPNGSLEAWLHCPLGINCPLDWDTRIKIALDVARGLSYLHEDSQPCVIHKDFKASNILLENNFHAKVADFGLAKQAPEGRSNYLSTRVMGTFGYEAPEYAMTGHLLVKSDVYSYGVVLQELLTGRKYVTAKDKDRLEEIADPKLGGKYPKEDFVRVCIIAAACVAPEASQRPTMGEVVQSLKMVQRITEYQDSMLASSNTRPNLRQSSSTFEFDGTSSMFSSCLYSGLSAAFDNENISRMVVFSEDLHEGR. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03521 282 SUPERFAMILY Protein kinase-like (PK-like) 1 248 IPR011009 -
Seca6g03521 282 Pfam Protein tyrosine and serine/threonine kinase 1 212 IPR001245 GO:0004672|GO:0006468
Seca6g03521 282 FunFam Receptor-like serine/threonine-protein kinase ALE2 32 231 - -
Seca6g03521 282 ProSitePatterns Serine/Threonine protein kinases active-site signature. 78 90 IPR008271 GO:0004672|GO:0006468
Seca6g03521 282 ProSiteProfiles Protein kinase domain profile. 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03521 282 PANTHER OS01G0750732 PROTEIN 1 232 - -
Seca6g03521 282 Gene3D Transferase(Phosphotransferase) domain 1 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03521 Seca-Chr6 102387808 102390612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03521 1 282 Receptor kinase-like Gene Family AT4G02010 79.000 8.28e-168 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca6g03521 PK_Tyr_Ser-Thr 2.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03521 - - jre:108992148 494.582