Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03517 ATGGCTTTCCATGACCATCTATCACACGAAATCACTTTTCAGCCTTTCACCGACGAGCAACAGTTAAGTCAAAGCAGAGACATGCAGAGGATGCTACCACTCTCCGGCGGCGGTGGTTCGGCGCCGACGTGGCTCAACAACGCCGCCACACTTCGGCAGCAGAATTTCCTCCACTTGCAACCGGATCACTCGACGGCACAAAACGACGACGTTCGAGGACTGATTGGAACATCAGAGAAAAGCACGGATCGGAACCGGACGGAAAGCAACGCTGAATCGGAGGATTTAGCAGAATACAAAGCAGACATTTTAGGTCACCCTCTGTATGACCAGCTTCTTTCGGCTCACGTTTCGTGTTTGAGGATCGCCACACCGGTGGACCAGCTTCCACGGATCGATGCTCAGCTTCAACAGTCGCAGCGCGTGGTGGATAAGTACTCTGGCCTTGGGAATGGAGTGGTAGATGAGAAGGAGCTTGATCAATTCATGACGCATTATGTTTTACTTCTCTGCGCTTTTAAAGAGCAATTGCAACAGCATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTCGAGCAATCTCTGCAAAGCTTGACCGGAACAGGTGTATCTCCTGGGGAAGGAACGGGTGCAACCATGTCAGACGATGAAGAAGACCAAGCAGAGAGCAATGCTAACTTATACGAAGCAAGTTTGGATGGCGCTGACAGTCTCAGCTTTGGCCCTCTTGTTCCCACTGAAAGTGAGAGATCTTTGATGGAGCGTGTGAGGCAAGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGGAGAAGATCGTGGACATAAGAGAAGAAATTCTACGGAAGAGAAGAGCCGGGAAGCTCCCTGGGGATACTACTTCCCTTTTAAAAGCATGGTGGCAGTCACATTCTAAATGGCCCTATCCAACGGAAGAGGACAAGGCTAGGTTGGTGCAGGAAACAGGATTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCACACCAATCCCTCATCTTCTAGTGGCTCCAAAAGCAAGCGCAAAAGTAGTAGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1119 0.4888 MAFHDHLSHEITFQPFTDEQQLSQSRDMQRMLPLSGGGGSAPTWLNNAATLRQQNFLHLQPDHSTAQNDDVRGLIGTSEKSTDRNRTESNAESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGTGVSPGEGTGATMSDDEEDQAESNANLYEASLDGADSLSFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSSSAGETSNQSFM. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03517 372 ProSiteProfiles 'Homeobox' domain profile. 283 346 IPR001356 GO:0003677
Seca6g03517 372 SUPERFAMILY Homeodomain-like 285 349 IPR009057 -
Seca6g03517 372 CDD homeodomain 286 347 IPR001356 GO:0003677
Seca6g03517 372 MobiDBLite consensus disorder prediction 62 93 - -
Seca6g03517 372 SMART KNOX2_2 148 204 IPR005541 GO:0003677|GO:0005634
Seca6g03517 372 Pfam ELK domain 263 284 IPR005539 GO:0003677
Seca6g03517 372 MobiDBLite consensus disorder prediction 1 24 - -
Seca6g03517 372 ProSiteProfiles ELK domain profile. 263 283 IPR005539 GO:0003677
Seca6g03517 372 SMART KNOX1_2 97 141 IPR005540 GO:0003677|GO:0005634
Seca6g03517 372 MobiDBLite consensus disorder prediction 76 93 - -
Seca6g03517 372 Pfam Homeobox KN domain 303 342 IPR008422 GO:0003677|GO:0006355
Seca6g03517 372 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 102 356 - -
Seca6g03517 372 MobiDBLite consensus disorder prediction 203 226 - -
Seca6g03517 372 Pfam KNOX2 domain 154 203 IPR005541 GO:0003677|GO:0005634
Seca6g03517 372 SMART HOX_1 285 350 IPR001356 GO:0003677
Seca6g03517 372 Pfam KNOX1 domain 99 140 IPR005540 GO:0003677|GO:0005634
Seca6g03517 372 Gene3D - 289 367 - -
Seca6g03517 372 SMART ELK_2 263 284 IPR005539 GO:0003677
Seca6g03517 372 MobiDBLite consensus disorder prediction 340 372 - -
Seca6g03517 372 FunFam homeobox protein knotted-1-like 3 isoform X1 284 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03517 Seca-Chr6 102336288 102341497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03517 97 367 Homeobox Transcription Factor Family AT5G11060 82.545 1.72e-162 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca6g03517 KNOX2 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03517 - - gmx:100816347 653.284