Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03504 ATGCATTCCTCTTGCAACAAAACAAAAATATACATAACTTATTTTATACTGACACCATTGCCTTTGCTTGGGGTAGTTACAATTGTCCCTCTTCCTTCTTCTCTTCAAGTTCCAATGGAGATTTTCAAATGCTTGTACATCAATCTTCTCGCTACTTTCATGCTATCAGCAGTTTTAGCAATCGACCCTTATTCAGAAGCACTCCTGAGCCTAAAATCTGAACTTGTAGATGATGATAACAGCTTGCATGACTGGGTGGTGCCACCCTCTGGAGGCAGCTTAACTGGGAAATCCTATGCATGTTCTTGGTCTGGTATCAAGTGTGACAAGGACTCAACAATTGTAACTTCCATAGACCTGTCTATGAAGAAACTTGGGGGTGTATTATCAGGGAAGCAATTTAGCGTCTTCACAAAGCTTGCTGATCTCAACCTGAGCCACAATTTCTTCTCTGGGCAGCTGCCAGCTGAAATTTTCAACCTCACCAGCCTAAAGAGCTTGGATATCAGCAGAAACAATTTTTCTGGTCACTTCCCAGGGGGAATTCCCAGACTCCAAAATTTGGCTGTGCTTGATGCCTTTAGCAACAGCTTTTCAGGGCCATTGCCTGCTGAATTTTCACAGCTAGAATATCTCAAGGTTCTTAATCTGGCTGGGAGTTACTTCAGAGGATCAATTCCATCTGAATATGGTTCTTTCAGAAGCCTTGAGTTTCTTCATCTAGCAGGAAATTCTCTCACAGGAAGTATACCTCCAGAACTGGGTAACCTCAAAACAGTGACCCACATGGAGATTGGCTACAACTTTTACCAGGGTTTTATTCCACCCCAACTAGGTAACATGAGCCAGCTTCAGTATCTTGACATAGCAGGTGCAAATCTTTCCGGTCCAATACCAAAGGAGCTCTCCAATCTCACCAGTTTGCAATCACTTTTTCTGTTCAGAAACCAGCTCACAGGTTCAATACCAAGTGAGTTCAGAAAAATCAAACCTCTCATAGATTTAGATCTCTCTGATAACTTCCTTTCAGGGTCCATTCCTGAAAGCTTTTCAGAGCTGAAGAACCTAAGACTGCTCAGTCTCATGTACAATGACATGAGTGGCACTGTTCCCGAAGGCATTGCACAACTTCCATCCTTGGAAACTCTTCTCATTTGGAACAATCGCTTCTCTGGATCACTTCCACAGAGCTTAGGCAGGAACTCCAAACTCAAATGGGTGGATGTCTCCACAAACAATTTCATTGGCAGCATACCCCCAGACATTTGTGTGAATGGAGAACTATTTAAGCTTATCCTGTTTTCTAACAAATTTACAGGTGATCTTTCATCAATCTCCGACTGTCCTTCCCTTGTTCGTCTTCGCCTAGAAGATAATTCATTCTCAGGAAAGATCCCTTTAAAATTCAGCCATCTTCCTGATATCTCATACGTTGATCTGTCCAGGAACAATTTTGTTGGTGGGATTCCCTCAGATATTTCTCAAGCTACTCAACTGGAGTATTTCAATGTCTCTTATAATCTGCAATTAGGGGGAACCATCCCTGCAAAAGTGTGGTCTTTGCCCCTACTTCTAAATTTTTCAGCATCTTCTTGTGGTATTTTAGGCAATCTTCCCCCATTTGAGTCCTGCAAATCAATATCAGTTATTGATCTTGATAGGAACAACTTATCTGGAATCATCCCAAACAGTGTTTCCAAATGTCAAGCTCTTGAGATAATCAAATTATCTGACAATAATATGACAGGTCAAATACCTGAGGAGCTTGCCAGTATCCCTGTTCTTGGTGTAGTAGACTTGTCTAACAATAAGTTCAATGGCCCCATACCTGCAAAGTTTGGTAGTTCTTCAAGTTTACAACTTTTCAATGTGTCTTTCAACAATATGTCTGGTTCAATACCCAAAGGAAAGTCATTCAAATTAATGGGTAGCAGTGCATTTGTTGGAAATTCAGAGCTATGTGGAGAACCTCTGAGACCATGTTCTGATTCAGTCGGAATATTGGGCAGCAAAGGCACGTGGAAGCTTACACGTATTGTTCTACTCTCTGTAGGGTTGCTAGTAATCCTTCTAGGATTGGCTTTTGGAATACTTTATTTTAGGAAGGGTGTCAAAAGTCAATGGAAGATGGTTTCATTTGTTGGACTCCCTCAATTCACAGCAAATGATGTTTTGACAAGCTTCAGTGCCACAAAACCAACAGAAGTTCTATCACCATCACCTGAAGTTACAAAAGCAGTTCTGCCAACAGGAATAACAGTTTTAGTCAAGAAGATTGAATGGGAAGCAAGGAGTATTAAGGTGGTATCAGAATTTATAATGCGACTAGGAAATGCAAGGCACAAGAATTTAATCAGACTGTTGGGTTTTTGCCACAACCAGCATCTAGTCTATCTTTTGTATGACTACTTGCCCAATGGGAATTTGGCTGAGAAAATTGGAATGAAATGGAATTGGGCAGCTAAATTCAGAACAGTGGTTGGAATTGCAAGGGGTCTTTGCTTCCTTCATCATGACTGTTACCCACCTATACCCCATGGAGACTTGAAGTCCAGCAATGTTGTGTTTGACGAAAATATGGAACCCCATTTGGCAGAATTTGGGTTCAAACATGTGTTGAAGTTGAGTAAAGGCTCATCTCCAACCAAAACTAACCGGGAAACAGAATACAATGAAGGCATGAAAGAGGAACTCTGCATGGATGTCTACAAATTTGGGGAGTTGATACTGGAAATTTTAACTGGTGGAAGGTTGACAATTGCAGAATCTAGCATTCACAGCAAATCAAGGGAGGTTCTTCTAAGAGAAGTTTACAATGATGATGAAGTGAGTTCCGCAAGTTCATTGGAAGAAATTAAACTGGTTCTTGAGGTTGCTATGCTTTGCACTAGAAGCAGATCATCCGATCGGCCATCCATGGAAGATGCACTGAAGCTTTTGTCAGGGTTAAAGAGTCTAGAAGATGGCAGAACTTCAAAAGAAGGGAAATAA 2991 0.4116 MHSSCNKTKIYITYFILTPLPLLGVVTIVPLPSSLQVPMEIFKCLYINLLATFMLSAVLAIDPYSEALLSLKSELVDDDNSLHDWVVPPSGGSLTGKSYACSWSGIKCDKDSTIVTSIDLSMKKLGGVLSGKQFSVFTKLADLNLSHNFFSGQLPAEIFNLTSLKSLDISRNNFSGHFPGGIPRLQNLAVLDAFSNSFSGPLPAEFSQLEYLKVLNLAGSYFRGSIPSEYGSFRSLEFLHLAGNSLTGSIPPELGNLKTVTHMEIGYNFYQGFIPPQLGNMSQLQYLDIAGANLSGPIPKELSNLTSLQSLFLFRNQLTGSIPSEFRKIKPLIDLDLSDNFLSGSIPESFSELKNLRLLSLMYNDMSGTVPEGIAQLPSLETLLIWNNRFSGSLPQSLGRNSKLKWVDVSTNNFIGSIPPDICVNGELFKLILFSNKFTGDLSSISDCPSLVRLRLEDNSFSGKIPLKFSHLPDISYVDLSRNNFVGGIPSDISQATQLEYFNVSYNLQLGGTIPAKVWSLPLLLNFSASSCGILGNLPPFESCKSISVIDLDRNNLSGIIPNSVSKCQALEIIKLSDNNMTGQIPEELASIPVLGVVDLSNNKFNGPIPAKFGSSSSLQLFNVSFNNMSGSIPKGKSFKLMGSSAFVGNSELCGEPLRPCSDSVGILGSKGTWKLTRIVLLSVGLLVILLGLAFGILYFRKGVKSQWKMVSFVGLPQFTANDVLTSFSATKPTEVLSPSPEVTKAVLPTGITVLVKKIEWEARSIKVVSEFIMRLGNARHKNLIRLLGFCHNQHLVYLLYDYLPNGNLAEKIGMKWNWAAKFRTVVGIARGLCFLHHDCYPPIPHGDLKSSNVVFDENMEPHLAEFGFKHVLKLSKGSSPTKTNRETEYNEGMKEELCMDVYKFGELILEILTGGRLTIAESSIHSKSREVLLREVYNDDEVSSASSLEEIKLVLEVAMLCTRSRSSDRPSMEDALKLLSGLKSLEDGRTSKEGK. 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03504 996 FunFam Leucine-rich repeat receptor-like protein kinase TDR 719 803 - -
Seca6g03504 996 ProSiteProfiles Protein kinase domain profile. 708 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03504 996 Pfam Protein tyrosine and serine/threonine kinase 750 978 IPR001245 GO:0004672|GO:0006468
Seca6g03504 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Seca6g03504 996 Gene3D Ribonuclease Inhibitor 508 665 IPR032675 -
Seca6g03504 996 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 212 974 - -
Seca6g03504 996 Gene3D Ribonuclease Inhibitor 262 507 IPR032675 -
Seca6g03504 996 FunFam Leucine-rich repeat receptor-like protein kinase TDR 804 988 - -
Seca6g03504 996 Gene3D Phosphorylase Kinase; domain 1 739 801 - -
Seca6g03504 996 SMART serkin_6 742 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03504 996 FunFam Leucine-rich repeat receptor-like protein kinase TDR 227 331 - -
Seca6g03504 996 SUPERFAMILY RNI-like 117 440 - -
Seca6g03504 996 FunFam Leucine-rich repeat receptor-like protein kinase TDR 350 663 - -
Seca6g03504 996 SUPERFAMILY L domain-like 347 654 - -
Seca6g03504 996 Gene3D Transferase(Phosphotransferase) domain 1 802 994 - -
Seca6g03504 996 FunFam Leucine-rich repeat receptor-like protein kinase 64 226 - -
Seca6g03504 996 Pfam Leucine rich repeat 547 605 IPR001611 GO:0005515
Seca6g03504 996 Pfam Leucine rich repeat 307 365 IPR001611 GO:0005515
Seca6g03504 996 Gene3D Ribonuclease Inhibitor 186 261 IPR032675 -
Seca6g03504 996 Gene3D Ribonuclease Inhibitor 63 185 IPR032675 -
Seca6g03504 996 SMART LRR_typ_2 233 257 IPR003591 -
Seca6g03504 996 SMART LRR_typ_2 305 328 IPR003591 -
Seca6g03504 996 SMART LRR_typ_2 377 401 IPR003591 -
Seca6g03504 996 SMART LRR_typ_2 161 185 IPR003591 -
Seca6g03504 996 Pfam Leucine rich repeat N-terminal domain 66 109 IPR013210 -
Seca6g03504 996 SUPERFAMILY Protein kinase-like (PK-like) 742 980 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03504 Seca-Chr6 102247416 102251373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03504 42 981 Receptor kinase-like Gene Family AT5G51350 54.774 0.0 967
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca6g03504 PK_Tyr_Ser-Thr 2.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03504 - - aprc:113852384 1687.55