Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03492 ATGAATTTTTCGGTTCCCAAATTTAAAACCGAAGACCCAAGCACAATATTGGGTTTAGGTTCAGTTCTTTGTTGCTTAAACTCGACTCTTATTGGACTCGTTTTCCTAGTCCTTTTTCCAGTACTCTTTCTCATACAAAGGTCCAAATTTGTACGCGGTAGAATGCAGCCACCTTTAGCTGCTGGTGCGTGGCCCATAATTGGCCATCTCTGGCAGTTAAGTGGTTCTGAAATGCCTCAATTAACTTTGGGTGCAATGGCTGACAAACATGGACCCATATTCACCATCAGGCTCGGGTCACAACGTGCCGTGGTAATCAGCAACTGGAAAGTGGCTAAAGAATGTTTCACCACCAACGACCTGGCCGTATCTTCGCGTCCTAGGGTCATTGCTGTCCAAAAATTGAGCTACGACCAAGCCATGTTTGCATTCGCACCCCACGGTCCTTATTGGCGTGAAGTGCGCAAGATTGCCACTCTAGAGTTGCTCTCGAATCGCCGAATCGAGCTATTAAGCCCAGTTCGTGTCTCTGAAGTGGAAACAAGCATTAAAGGGCTTTTCAAAATTTGGGCCGAGAAAAAGGACGAATTGGGCCGAGTGCAAGTTGAGATGAGGCAGTGGTTTAGTGAGTTGACACTGAGTGCGGTTCTTAGAATGGTGGCTGGGAAGCGATGTTTTGGCGCCACGGGTGAGGAGGTGTCACGACGGTGCTTGAAAGCGATGAGGGACTTCTTCCGTCTGAACGGGTTGTTCCTTGTGGGAGATGCGGTTCCTTGTCTTCGATGGTTGGATTTGGGTGGGCATGAGAAAGCCATGGAAGAAACTGCAAAGGAATTGGATAGCATTTTAGGTGAGTGGTTAGAGGAGCACCGCCAGAAGAGAGCTTCGGGTGTGGTTGCAGGGGACCAAGACTTTATGGATGTCATGCTTTCATGCCTTGATGCCACTCGAATCTTTGCCACCCTCTCTGTCTCTTCTATTAACACTTGTGCGATGCAGATTTTAATTGCAGCAGGGGTTGACACCACTGCAACAACCCTTACATGGACAATATGTCGTTTGCTAAATAACCCTGCTACTTTAAAAGAAGCACAAAAGGAATTGGATATCCAAATTGGGAAAGAACAACCTGTGAAGGAGTCAGACATAGATAAGTTGGTCTACATTCAAGCCATAGTTAAAGAGACGTTAAGACTAAACCCTCCAGCACCTTTTTCAGGACCTCGTGAGTTCACAAAGGATTGCATCATAGATGGTTACCACATCACAAAGGGAACAAGACTAATCACAAATTTGTGGAAGATTCACACTGATCCTAATGTTTGGTCAGATCCATTAGAGTTCAAGCCAGAGAGATTCCTGACTACCTACAAAGATTTTGATGTTAGAGGTGGTAATCATTTTGAGTTAATGCCATTTGGAAGTGGGAGAAGAATGTGCCCTGGAATATCTTTTGCCCTTCGGATGGTTCATCTAGTTTTGGCTAGTTTCTTGCAATCCTTTGATATTTCAAAACCATGA 1521 0.453 MNFSVPKFKTEDPSTILGLGSVLCCLNSTLIGLVFLVLFPVLFLIQRSKFVRGRMQPPLAAGAWPIIGHLWQLSGSEMPQLTLGAMADKHGPIFTIRLGSQRAVVISNWKVAKECFTTNDLAVSSRPRVIAVQKLSYDQAMFAFAPHGPYWREVRKIATLELLSNRRIELLSPVRVSEVETSIKGLFKIWAEKKDELGRVQVEMRQWFSELTLSAVLRMVAGKRCFGATGEEVSRRCLKAMRDFFRLNGLFLVGDAVPCLRWLDLGGHEKAMEETAKELDSILGEWLEEHRQKRASGVVAGDQDFMDVMLSCLDATRIFATLSVSSINTCAMQILIAAGVDTTATTLTWTICRLLNNPATLKEAQKELDIQIGKEQPVKESDIDKLVYIQAIVKETLRLNPPAPFSGPREFTKDCIIDGYHITKGTRLITNLWKIHTDPNVWSDPLEFKPERFLTTYKDFDVRGGNHFELMPFGSGRRMCPGISFALRMVHLVLASFLQSFDISKP. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03492 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 473 482 IPR017972 GO:0005506|GO:0016705
Seca6g03492 506 PANTHER CYTOCHROME P450 82C3-RELATED 34 506 - -
Seca6g03492 506 Gene3D Cytochrome P450 52 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03492 506 SUPERFAMILY Cytochrome P450 63 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03492 506 FunFam Cytochrome P450 82C4 47 506 - -
Seca6g03492 506 PRINTS E-class P450 group I signature 431 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03492 506 PRINTS E-class P450 group I signature 327 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03492 506 PRINTS E-class P450 group I signature 347 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03492 506 PRINTS E-class P450 group I signature 390 408 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03492 506 PRINTS E-class P450 group I signature 111 132 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03492 506 PRINTS E-class P450 group I signature 480 503 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03492 506 PRINTS E-class P450 group I signature 87 106 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03492 506 PRINTS E-class P450 group I signature 470 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03492 506 PRINTS P450 superfamily signature 338 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03492 506 PRINTS P450 superfamily signature 391 402 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03492 506 PRINTS P450 superfamily signature 480 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03492 506 PRINTS P450 superfamily signature 471 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03492 506 Pfam Cytochrome P450 61 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03492 Seca-Chr6 102129291 102133036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03492 26 503 Cytochrome P450 AT4G31940 48.374 2.29e-159 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03492 - - gmx:100803451 593.964