Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03486 ATGCCACGGTACCCTAAGGGCGGTGCCACCGTGGAGGAGGGTTCTGAGGTCAGTGCCTTTTTCTCCGTCCCCGGAATGAGTTGCGCAGCCTGCGCTGGATCCGTTGAGAAGGCCATCAAATGCCTACCTGGGATTCTTGAAGCCTTCGTCGATGTCGTCGATGTCCTCAACAACCATGCTCGAATCCTCTTTTACCCTTCCTTCGTTAATGAGGAGGAAATTCGCGAGGCCATTGAAGATGCTGGGTTTGAGGCCACGTTACTCACGGATGCGATGAGTGAAAAATTTGTTCAAGTGTGCCGCATACAAATCAAAGGAATGAGTTGTACATCGTGTTCCTCCACCGTTGAATCTGCTCTGGTAGCCATCCACGGTGTTGTTAAAGCTAGAGTAGCGTTGGCAACCGAAGAAGCTGAAGTTCACTACAGTCCAAATGTTGTTAGCTATAACCAAATTTTGGAAGCTGTAGAAGATACTGGATTCGAAGCTGCACTTATCAGTTCGAGTGAAGATTTGAGCAAGATAGACCTCCTGGTGGAAGGTGATCTCACTGATCATTCAAAAAGGGGGCACGGCTACGGGGGAAAACATCTTGCTACGAAGCATCTTCGAATTGATGGGGTGAAGGACACCATAGCTGTCGCCTCCTGTAAAGTTGGTTTGCTTGATGCCGATGTGTATGGACCCAACATTCCCACCATGATGAACATCAATGCAAAGCCTGAAATCACCCTAGCTTGCTACTTGGTTCTTGGAAGTACTCTGGCGATGGCGCGCCTACAGGGAAGCTCTGGCAATGGCGTGCCTACAGGAAGCTCTAGCCACGGTGGCCTCTCTTCCCTTTCTCCGGTGGTTGTGGTTGGTAAAGCCACGATGGGTCAAGGAGCTGCAAGGTACCCATTTCGCCTCTTGCTTTCATCTAGTTTAATGCTTGAAACTTGGGTTTGTTGCTTCTTGGCTTTCGTTTTTTTTTTTAATGCTTGA 984 0.4898 MPRYPKGGATVEEGSEVSAFFSVPGMSCAACAGSVEKAIKCLPGILEAFVDVVDVLNNHARILFYPSFVNEEEIREAIEDAGFEATLLTDAMSEKFVQVCRIQIKGMSCTSCSSTVESALVAIHGVVKARVALATEEAEVHYSPNVVSYNQILEAVEDTGFEAALISSSEDLSKIDLLVEGDLTDHSKRGHGYGGKHLATKHLRIDGVKDTIAVASCKVGLLDADVYGPNIPTMMNINAKPEITLACYLVLGSTLAMARLQGSSGNGVPTGSSSHGGLSSLSPVVVVGKATMGQGAARYPFRLLLSSSLMLETWVCCFLAFVFFFNA. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03486 327 ProSiteProfiles Heavy-metal-associated domain profile. 17 86 IPR006121 GO:0046872
Seca6g03486 327 SUPERFAMILY HMA, heavy metal-associated domain 16 88 IPR036163 GO:0046872
Seca6g03486 327 CDD HMA 21 86 IPR006121 GO:0046872
Seca6g03486 327 ProSitePatterns Heavy-metal-associated domain. 23 52 IPR017969 GO:0046872
Seca6g03486 327 FunFam Copper-transporting ATPase HMA5 97 168 - -
Seca6g03486 327 ProSitePatterns Heavy-metal-associated domain. 104 133 IPR017969 GO:0046872
Seca6g03486 327 ProSiteProfiles Heavy-metal-associated domain profile. 98 164 IPR006121 GO:0046872
Seca6g03486 327 NCBIfam copper ion binding protein 21 85 IPR006122 GO:0005507
Seca6g03486 327 NCBIfam copper ion binding protein 102 163 IPR006122 GO:0005507
Seca6g03486 327 CDD HMA 102 164 IPR006121 GO:0046872
Seca6g03486 327 Gene3D - 98 171 - -
Seca6g03486 327 SUPERFAMILY HMA, heavy metal-associated domain 98 168 IPR036163 GO:0046872
Seca6g03486 327 FunFam Copper-transporting ATPase HMA5 16 90 - -
Seca6g03486 327 Gene3D - 18 91 - -
Seca6g03486 327 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 9 188 - -
Seca6g03486 327 Pfam Heavy-metal-associated domain 21 84 IPR006121 GO:0046872
Seca6g03486 327 Pfam Heavy-metal-associated domain 102 162 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03486 Seca-Chr6 102087119 102090666 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03486 19 189 Primary Pumps ATPases AT1G63440 60.234 2.55e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03486 K17686 - qsu:112004769 251.521