Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03483 ATGTTGAAGGAAATGCAGAAGATGATGACCCCTCAACACAGAAGAAACTGGTCTGTCGAACTTCATAGAAAATTTGTTGCTGCAGTTAATCAACTCGGCATATATAAGGCTGTTCCAAAGAAAATACTTGACCTTATGAACGTTGAAGGGCTTACAAGGGAAAATGTTGCAAGTCATCTGCAGAAATATAGACTCTATCTGAAAAAGGCATCCCAGCAAGCTAGCATGGTTGCTGCGATGGGTAGTAGTGATTATTACCTGTGGATAGGAAGGATCTCAAGCACCACATTACCATCATATGCCTCAAGTGGAATTTTTGGAAAGCTGAATTCCCTAGCTGCCTTGAACTTGAGAGGAATCAGTTCATATGCACTAATCCGTCCTGTTCAATCTCAAAACATTAATAACTCCTTAAACACACTTGGAAACATTCAGCCATCCATCGTGTTCAGTCTCCTGTTACTCTTTCTTTGTGTTTGTTTGTTTGTTTTTTATAATTTTTAA 504 0.3889 MLKEMQKMMTPQHRRNWSVELHRKFVAAVNQLGIYKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKASQQASMVAAMGSSDYYLWIGRISSTTLPSYASSGIFGKLNSLAALNLRGISSYALIRPVQSQNINNSLNTLGNIQPSIVFSLLLLFLCVCLFVFYNF. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03483 167 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 104 IPR044841 GO:0003700|GO:0006355
Seca6g03483 167 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 68 IPR017930 -
Seca6g03483 167 NCBIfam myb-like DNA-binding domain, SHAQKYF class 13 65 IPR006447 GO:0003677
Seca6g03483 167 SUPERFAMILY Homeodomain-like 11 69 IPR009057 -
Seca6g03483 167 Gene3D - 8 70 - -
Seca6g03483 167 FunFam Two-component response regulator 9 71 - -
Seca6g03483 167 Pfam Myb-like DNA-binding domain 14 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03483 Seca-Chr6 102007017 102009700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03483 14 148 Response Regulator Gene Family AT5G58080 46.667 2.20e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca6g03483 Myb_DNA-binding 8.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03483 K14491 - gmx:100807822 211.846