Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03482 ATGGCTGTGGAGAACCAAAGGGGTCATTTGGGGGATGAAGATGGGGCCTGTGACCGCTTTCCTGTGGGTATGCGTGTTCTGGCTGTGGATGACGACCCAATTTGTCTCAAAGTGTTGGAGAACCTGCTTCGCAAATGCCAATATCAGGTTACTACAGCTAATCAGGCAATTGAGGCGCTGAGAATGTTGAGGGAAAACAGAAATAAATTTGACCTCGTTATCAGTGATGTGAATATGCCTGACATGGATGGATTTAAGCTCCTTGAATTGGTGGGACTTGAAATGGACTTACCTGTAATCATGTTGTCAGCACATAGTGATACAAAGTTGGTAATGAAGGGGGTTACACATGGTGCATGTGATTATTTGCTGAAACCGGTTAGAATTGAAGAGCTCAAGAACATTTGGCAACATGTAGTCCGAAAAAAGAAACCTGACCAGAACAAGGCTTCCAATGGCGAAAAAGCTCCTAATATTTCTGGAGGAGGCAGTCAGGGCAAAATGTCAGACAACAGTGCTGACCAGAATAAAAAGCTTGGTAAGAAAAGGAAGGACCAAAGTGAGGAGGAAGAAGAAGATGTTGAAGGAAATGCAGAAGATGATGACCCCTCAGCACAGAAGAAACCTCGTGTAGTTTGGTCTGTCGAGCTTCATAGGAAATTTGTTGCTGCAGTTAATCAACTGGGCTTAGATAAGGCTGTTCCGAAGAAAATACTTGACCTTATGAACGTTGAAGGTCTTACAAGGGAAAATGTTGCAAGTCATCTGCAGAAATATAGACTCTATCTGAAAAAAGCCACCCAGCAAGCTAGCATGGTTGCTGCGCTGGGTAGTAGTGATTCTTACCTGCGTATGGGTACGATAGATGGATATGGAGATTTTTGCTCATCATCTGGATCTGGAAGGATCTCAAGCACCACATTACCATCATATGCCTCGAGTGGAATTTTTGGAAGGCTGAATTCCCCAGCTGCCTTGAACTTGAGAGGAATCAGTTCATCTGCACTAATCCGTCCTGTTCAGTCTCAAAACATTAATAACTCCTTAAACACACTTGGAAACATTCAGCCATCCATGTTTCCTACAAATCAAAGCTCAAGCTTATTACAGGGGATTCCGACATCGATTGAGCTTAATCAATCTAAGCAAAACAACTGCACGACTGGTATATCACAGTTAAATCAGGTTGATTCAAGCGGATTTGCAGTTGCCTCCGGCTTCCCAGACAGTAGGGCTACTGTTAGTAATGCAAATAGTTCTCTACCTTGTGTCTCCAATAATCATTTAATGTTACAAGGGAATTCACAACAAACACATAATACAGGAGCCTTTAGAAATCAGTCTTCTGTTAGAGCCGGTACTTTGAGCACAGAATCTTTTGACATTGGCATTTGTGGTTCTTCTAATTTGTTGGATTATAATCGGTGTAATGAAAACTGGCAAAATGCAGCTCAATTGTCTAAATTTCCTGCTAATTCTTTGCCACTGTGTGAGGGTTTCAATAATGACCAACTGCCTCCCACCAGCATTAATGTTTCAAACTCAAGTACACACATTGGTAACAGTCCGGTGGATTTTAATTCTGTTCCCTTGGAGGATGCCAGAAATGAGCTGCGCTGCCAAGAAGGCTTAATTGGGAATATTGTACAGCCTTCAAGTTACACACCCAGACAAAGGTGGGAAGAACATAAACTGGATTACAATCAAAACATGAGCCGTCCTTTCAATCCTGTAAATTCCAGTGGATTGACAAGTTCTTTGGGGCATAGTTTAAACCAAATAAATGGCGCTTCCTCATCAATTGCCCACTGCACTGAAGTTGGGAAATTTTCTTCAGACATACGACTAAAGTCAAATGATGCCTACATGGATGGATTTATTCAGAATTTTGGGACCTTGGATGACATAATGGGTACAATGGTCAAAAGGGTATGA 1935 0.4207 MAVENQRGHLGDEDGACDRFPVGMRVLAVDDDPICLKVLENLLRKCQYQVTTANQAIEALRMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTKLVMKGVTHGACDYLLKPVRIEELKNIWQHVVRKKKPDQNKASNGEKAPNISGGGSQGKMSDNSADQNKKLGKKRKDQSEEEEEDVEGNAEDDDPSAQKKPRVVWSVELHRKFVAAVNQLGLDKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKATQQASMVAALGSSDSYLRMGTIDGYGDFCSSSGSGRISSTTLPSYASSGIFGRLNSPAALNLRGISSSALIRPVQSQNINNSLNTLGNIQPSMFPTNQSSSLLQGIPTSIELNQSKQNNCTTGISQLNQVDSSGFAVASGFPDSRATVSNANSSLPCVSNNHLMLQGNSQQTHNTGAFRNQSSVRAGTLSTESFDIGICGSSNLLDYNRCNENWQNAAQLSKFPANSLPLCEGFNNDQLPPTSINVSNSSTHIGNSPVDFNSVPLEDARNELRCQEGLIGNIVQPSSYTPRQRWEEHKLDYNQNMSRPFNPVNSSGLTSSLGHSLNQINGASSSIAHCTEVGKFSSDIRLKSNDAYMDGFIQNFGTLDDIMGTMVKRV. 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03482 644 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Seca6g03482 644 MobiDBLite consensus disorder prediction 151 173 - -
Seca6g03482 644 Pfam Myb-like DNA-binding domain 210 260 IPR001005 -
Seca6g03482 644 SUPERFAMILY CheY-like 23 146 IPR011006 -
Seca6g03482 644 PIRSF RR_ARR_type-B 1 637 IPR017053 GO:0003677|GO:0003700|GO:0009736
Seca6g03482 644 Gene3D - 23 157 - -
Seca6g03482 644 Gene3D - 204 266 - -
Seca6g03482 644 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Seca6g03482 644 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 378 IPR045279 GO:0009736
Seca6g03482 644 MobiDBLite consensus disorder prediction 143 207 - -
Seca6g03482 644 CDD REC_typeB_ARR-like 26 140 - -
Seca6g03482 644 SMART REC_2 24 136 IPR001789 GO:0000160
Seca6g03482 644 FunFam Two-component response regulator 204 267 - -
Seca6g03482 644 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 261 IPR006447 GO:0003677
Seca6g03482 644 MobiDBLite consensus disorder prediction 174 189 - -
Seca6g03482 644 SUPERFAMILY Homeodomain-like 206 265 IPR009057 -
Seca6g03482 644 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 264 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03482 Seca-Chr6 101990087 101995172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03482 16 438 Response Regulator Gene Family AT2G25180 53.721 5.88e-129 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca6g03482 Response_reg 1.2e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03482 K14491 - gmx:100807822 1056.59