Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03471 ATGGGTCTGCAAAACATGCAAAATCAAAGTATGCATTTTGTTCTGTCCACTGATGCCAAACCAAGGCTAAAATGGACTCCTGAGCTTCACCAACGATTCATTGAAGCAACTAATCAGCTTGGAGGTGCAGAAAAGATATCCCCTGATCAGAACCTCAAGATCACTAAATTTCTAGGAGTTGCAGAATGTTTACCTGACTCTACCAGGGATTGCTATGATGGGGTCTACAGAACCATTGACATCTATCTTGAGGCTCATCCAATGATTGCATTTGAAGAGAGGTCAAGATTGTGTAGATGTCTTGATTACAATAAACTCAGCTTTGAAGCTTCTAAAGATCTTGCTGCCAAGAACCCCAGAATACCTCCAAGGATTGCAATGGAGGCTCTTATTTCTCAACAAACAAATATCCCATCATCTGAATTTGCTATTGATGAAAGTGAAATAATGAGCCCTTCCCAAATCATTTTATACTATGAAGACAATTCAGAAAGTTTCTTGGAGGAGAAAGAAGATATGAAAGTAAACATAGAGAGAATGCAGTGGAGAGTGAATGAATTGGAGAAATTATGTAGGGAAATGAAGGTTCAAATGTCAAGGTTTATTAGCCATGATGTCTAG 621 0.3865 MGLQNMQNQSMHFVLSTDAKPRLKWTPELHQRFIEATNQLGGAEKISPDQNLKITKFLGVAECLPDSTRDCYDGVYRTIDIYLEAHPMIAFEERSRLCRCLDYNKLSFEASKDLAAKNPRIPPRIAMEALISQQTNIPSSEFAIDESEIMSPSQIILYYEDNSESFLEEKEDMKVNIERMQWRVNELEKLCREMKVQMSRFISHDV. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03471 206 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 50 IPR006447 GO:0003677
Seca6g03471 206 Coils Coil 170 197 - -
Seca6g03471 206 ProSiteProfiles NPH3 domain profile. 1 136 IPR027356 -
Seca6g03471 206 Gene3D - 19 69 - -
Seca6g03471 206 PANTHER OS12G0117600 PROTEIN 45 189 IPR043454 -
Seca6g03471 206 Pfam NPH3 family 45 111 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03471 Seca-Chr6 101857472 101858950 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03471 45 202 EF-hand Containing Proteins AT3G44820 28.571 1.80e-19 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca6g03471 NPH3 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03471 - - gmx:100785736 246.128