Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03463 ATGATAATTATGCAGCCCTGTAGCAGAGAAATGCAAGGAATCAACTCTCTCTTGAACTCTTCTCAAATCTCTCTCCAAGACCTCCACAACAACAACAACAACCAGATCCAAAATTCACACATGAACCACCAACAACTCAACCCTCACTTCGACCCAACTTCCCACGATGATTTCCTTGACCAAATGCTCTCTACCCTTCCTTCTTGCTCCTGGCCTGACCTCAACCCCAACAACAAACCCTTGTGGGACCCTAATAACGCCCCTGATATCAAGCCCGCTGAAACGACGCCGTCTACCGCTGAGAATGTCGCTTTCCCTTATGATGAACACGCCACCTTAGCATCCAAGTTCCGTAACCACCAGATCAGCGCCACCTCTCCTTCAACCAAAGCCGCTCTCATGCTTCACCAACAGCTTCTCATGTCCAGAGACCCTAACCTTCTCCAGATGCCGCTTTCCTTGCCTGGAAACGACGTCGTTGACGCCACCACCTTCAAATCTCCCAATCCTAGTGGTGAAGCTTCAGTTCAAGCTCTCTACAACGGCTTCTCCGGATCTCTGCATGGCACCGGTCAAGCCTCCAACCAGGCTCAGCATTTTCAACATCCTCAGAATCCGATTCAGGGGCAGAATTTCGGAGGTGCAGTTGCGGGAGGCGCAACGAACCAAGCAGCGGCGAGCGGTTCAGCCGGTGGAGCACCGGCTCAGCCGAGGCCGAGGGTTCGGGCTAGGAGAGGTCAAGCGACGGACCCACACAGCATCGCTGAAAGGTTACGAAGGGAGAGAATTGCAGAGAGGATGAAGGCCCTGCAGGAACTGGTCCCCAATGCCAACAAGACAGACAAGGCATCCATGCTGGATGAGATCATCGATTACGTGAAGTTCTTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTCGCTCCCCTTGTTGCTGATATGTCCTCTGAGGTTATTATAAACCATTCATTCAAGTGTTTTTCCTTTTCATACTTTACTAATCAGCTAGCTAGAACCATACCATTATCAACCAAACTTTAG 1062 0.5104 MIIMQPCSREMQGINSLLNSSQISLQDLHNNNNNQIQNSHMNHQQLNPHFDPTSHDDFLDQMLSTLPSCSWPDLNPNNKPLWDPNNAPDIKPAETTPSTAENVAFPYDEHATLASKFRNHQISATSPSTKAALMLHQQLLMSRDPNLLQMPLSLPGNDVVDATTFKSPNPSGEASVQALYNGFSGSLHGTGQASNQAQHFQHPQNPIQGQNFGGAVAGGATNQAAASGSAGGAPAQPRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEVIINHSFKCFSFSYFTNQLARTIPLSTKL. 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03463 353 MobiDBLite consensus disorder prediction 30 53 - -
Seca6g03463 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 68 311 - -
Seca6g03463 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 247 296 IPR011598 GO:0046983
Seca6g03463 353 FunFam Transcription factor bHLH66 244 309 - -
Seca6g03463 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 245 307 IPR036638 GO:0046983
Seca6g03463 353 MobiDBLite consensus disorder prediction 187 253 - -
Seca6g03463 353 SMART finulus 253 302 IPR011598 GO:0046983
Seca6g03463 353 MobiDBLite consensus disorder prediction 30 51 - -
Seca6g03463 353 MobiDBLite consensus disorder prediction 187 229 - -
Seca6g03463 353 Pfam Helix-loop-helix DNA-binding domain 252 297 IPR011598 GO:0046983
Seca6g03463 353 Gene3D - 242 304 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03463 Seca-Chr6 101778867 101782562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03463 178 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 64.430 4.56e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca6g03463 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03463 - - gmx:100806899 404.445