Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03460 ATGATAGGTTTTTGGTTCAAAAGAATTGAGGTAGGTCGTGGCCTCACCAAGCGTATAATCGGCGGCAGAAATTGTCACCGCAAACACGTCGAAGACGGAACCAACATCGATGTGCACTCCACTCTTCTCCATGGCAAGTACGAACTAGGCCGTCTTCTCGGCCATGGAACCTTCGCGAAGGTCTACCACGCTAGAAACCTTCAAACCGGAAAAAGCGTCGCCATGAAAGTCGTTGGAAAAGAAAAGGTCATCAAAGTCGGCATGGTGGAACAGATCAAGAGAGAAATCTCTGCCATGAACATGGTCAAGCATCCAAACATCGTTCAACTCCATGAAGTCATGGCTAGCAAGACCAAGATCTACATCGCCATGGAACTCATTCGCGGTGGCGAGCTCTTCAACAAGATCGCTAAGGGACGTTTAAGGGAAGACGCCGCCAGAATGTACTTCAAGCAACTCATCTCCGCCGTCGATTTCTGCCACAGCCGCGGTGTCTACCACCGTGATTTGAAGCCGGAGAATCTCCTCCTTGATGAAGAAGGAAACCTCAAGGTCACCGACTTTGGCCTCAGCACCTTCTCTGAACACCTCAGACAGGACGGTTTGCTCCACACGACTTGCGGAACTCCGGCGTATGTAGCGCCGGAGGTGATCGGAAAAAAAGGCTATGACGGTGCTAAGGCTGATATATGGTCCTGTGGTGTCATTCTCTATGTTCTTCTCGCAGGGTTTCTACCCTTCCAAGATGAAAATCTTGTTGCTATGTATAAGAAGATTTACAGAGGAGACTTCAAATGTCCTCCTTGGTTTTCCTCTGAAGCTCGAAGACTCATCACCAAGCTTCTCGACCCGAACCCGAATACGCGAATCACGATCTCCAAGATCATGGACTCGTCATGGTTCAGGAAATCATTGCCGAAAAACATGGAAGAGTTTGATTTCGAGGAGAAATTGAAACAGCAGCAGCATCAACCGTCGACGATGAATGCTTTTCATATAATTTCCCTTTCGGAAGGGTTTGATTTGTCGCCGTTGTTTGAGGAGAAGAAGAGAGAAGAGAAAGAGGAGATGAGGTTCGCAACGACAGGGCCAGCGAGTAGTGTGATTTCGAGGTTGGAAGAAGTGGCGAAGGCTGTGAAGTTTGATGTGAAGAAGAGTGATACTAAGGTGAGGTTGCAGGGTCAGGAGAGGGGGAGAAAAGGGAAGCTGGCTATTGCGGCGGATATATACGCCGTTACGCCGTCGTTTTTGGTGGTGGAGGTGAAGAAGGACAATGGTGATACGTTGGAGTATAATCAATTCTGTAGTAAAGAGCTTCGCCCTGCGCTTAAAGACATTGTTTGGAGAACCTCACCTGCTGAGAATCCCACACCTGCTTGA 1380 0.4855 MIGFWFKRIEVGRGLTKRIIGGRNCHRKHVEDGTNIDVHSTLLHGKYELGRLLGHGTFAKVYHARNLQTGKSVAMKVVGKEKVIKVGMVEQIKREISAMNMVKHPNIVQLHEVMASKTKIYIAMELIRGGELFNKIAKGRLREDAARMYFKQLISAVDFCHSRGVYHRDLKPENLLLDEEGNLKVTDFGLSTFSEHLRQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADIWSCGVILYVLLAGFLPFQDENLVAMYKKIYRGDFKCPPWFSSEARRLITKLLDPNPNTRITISKIMDSSWFRKSLPKNMEEFDFEEKLKQQQHQPSTMNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATTGPASSVISRLEEVAKAVKFDVKKSDTKVRLQGQERGRKGKLAIAADIYAVTPSFLVVEVKKDNGDTLEYNQFCSKELRPALKDIVWRTSPAENPTPA. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03460 459 ProSiteProfiles NAF domain profile. 323 347 IPR018451 GO:0007165
Seca6g03460 459 CDD CIPK_C 329 444 - -
Seca6g03460 459 FunFam Non-specific serine/threonine protein kinase 38 126 - -
Seca6g03460 459 Pfam Protein kinase domain 47 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03460 459 SUPERFAMILY Protein kinase-like (PK-like) 44 340 IPR011009 -
Seca6g03460 459 FunFam Non-specific serine/threonine protein kinase 37 327 - -
Seca6g03460 459 ProSitePatterns Protein kinases ATP-binding region signature. 53 80 IPR017441 GO:0005524
Seca6g03460 459 Gene3D Transferase(Phosphotransferase) domain 1 129 306 - -
Seca6g03460 459 CDD STKc_SnRK3 46 300 - -
Seca6g03460 459 SMART serkin_6 47 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03460 459 FunFam Non-specific serine/threonine protein kinase 323 448 - -
Seca6g03460 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Seca6g03460 459 ProSiteProfiles Protein kinase domain profile. 47 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03460 459 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 37 445 - -
Seca6g03460 459 Gene3D Phosphorylase Kinase; domain 1 44 128 - -
Seca6g03460 459 Pfam NAF domain 325 385 IPR004041 GO:0007165
Seca6g03460 459 Gene3D Kinase associated domain 1, KA1 322 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03460 Seca-Chr6 101718462 101719981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03460 28 453 CBL-interacting serine-threonine protein kinases AT4G30960 75.057 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca6g03460 Pkinase 2.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03460 - K07198 gmx:547644 758.444