Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03455 ATGGGTTTGGGAGTATTTGGTTCTGTTCTAGTTCTGACACTCTTCTTCAAGCATTTAGCATGCCAACAACCAAATACTGATGATTTCTTTGTGTCTGATTTTTTCAAGAAGATGGGTTTAGCATCTTCTAAGGCTTACAACTTCTCTTCTTCTGTTTGTTCATGGCAAGGGGTTACCTGTGATGCCAAGAAAGAACATGTTGTTGGGTTAGTTGTTTCTGGTATGGGCCTCTCTGGTCCTATTCCAGATACCACCATTGGCAAGCTTAGCAAGATTCAATCTTTGGACCTCAGCAACAACAAAATCACTGACTTACCTTCAGATTTCTGGAGTTTAAGCTTTCTCAAGAGCCTTAACCTCTCCTCTAATCAGATTTCTGGCTCATTGACTAACAACATTGGAAACTTTGGCTTGCTAGAAGTATTTGACTTATCCAGCAACAATTTCTCTGGGGAAATTCCTGAAGCTATTAGTTCTTCTGTGAGTCTGAAGGTCCTCAAACTTGATCACAACAGGTTTGAGCAAAGCATACCTTCTGGGATTCTCAAGTGTCAGTCTCTTGTTTCAATTGATCTTTCATCAAATCAGCTAAGTGGGGCACTTCCAGATGGTTTTGGTGCTGCTTTTCCTAAGCTCACAAACTTGAACCTTGCTGGGAATAATATTTATGGACGTGATTCAGATATTTCTAGGTTAAAGTCCATTGTGAGTCTCAACATATCTGGCAATTCATTTCAGGGTTCTGTCATGAGCATGTTTCAGGGAAGGCTGGAAGTTATGGACCTTAGCAGAAACCAATTCCAAGGTCACATTTCTCAGGTACAGTCCATCTCTAATTACAATTGGTCTCATTTAGTTTATCTGGATTTGTCAGAGAATCAGCTTAGTGGGGAAATTTTCCAAAATTGGAATGAATCCCAGAATCTAAAGCACCTTAATCTTGCTCATAATAGATTTACCAGACAGAAATTCCCCAAGATTGAAATACTCTCAAGATTGGAATATCTAAACTTGTCCAAAACTAGTCTGATTGGTTACATTCCTGCAGAAATTTCACAACTTAGTAATTTGAAAACACTTGATATTTCTATGAATCATCTTATAGGGCAAATCCCCTTTCTAAGGAATAAAAACCTCCAAATTCTTGACCTTTCCAACAACAATTTGAGTGGAGAAGTCCCTCCATCAGTCTTAGAGAAACTCCCATGGATGGAGAAATACAATTTCTCTTATAATAACTTAACCCTCTGTGCTTTGGAAATCAAACCAGCTATCCTCAAAACAGCATTCTTTGGATTAGTGAACAGTTGTCCAATTGCTGCAAACCCAAGTCTCTTTAAGAAAAGAGCCACTCAACACAAGGGAATGAAGCTAGCTCTGGCATTGACCCTTTCAATGATCTGCTTGCTTGTTGGACTTTTGTTTCTAGCAGTTAGCCGCCTAAGGAAAACAAAATCTTGGCCAGTTAAGCAAGCTTCATACAAAGAAGAACAAAATATGTCAGGTCCCTTTTCATTCCACACTGATTCAACCACTTGGGTGGCTGATGTTAAGCAACCAACATCTGTCCCAGTAGTAATCTTTGAGAAGCCACTGTTGAATATCACATTTGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTTTGGCAGAAGGAAAATTCGGGCCTGTTTATAGAGGTTTTCTACCTGGTGGCATTCATGTAGCAGTTAAAGTTCTGGTTGTTGGATCTACTTTGACAGATAAAGAAGCTGCAAGAGAGCTTGAGTATCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTCTAACTGGATATTGTGTAGCTGGGGATCAGAGAATTGCCATATATGATTACATGGAGAATGGGAACTTGCAAAACTTGCTTTATGACTTGCCACTTGGGGTACTACAAAGGACAGATGATTGGAGCACAGATACATGGGAAGAAGATGACAATAATGGGATTCAAAATGCTGGATCTGAAGGATTGCTCACAACTTGGAGATTTCGCCACAAAATTGCTCTTGGCACTGCCAGAGCATTGGCATTTCTGCATCATGGATGTTCACCACCAATTATTCACAGAGATGTCAAAGCTAGCAGTGTTTATTTGGATTATAACTTGGAGCCAAGGTTGTCTGATTTTGGGCTGGCTAAGATTTTTGGAAGTGGCTTGGATGAGGAGATTGCACTTAGTTCACCTGGTTATGTTCCACCAGAGTTTTCTCAACCAGAATTTGACACCCCATCTCCAAAATCTGATGTATACTGTTTTGGGGTTGTTCTCTTTGAGCTTCTAACTGGGAAGAAGCCAGTTGGAGATGAGTATCCTGATGAGAAAGAAGCAACTTTGGTAAGTTGGGTCAGAGGATTGGTGAGAAAGAACATAGCTTCAAGAGCTATTGATCCAAAAATTCATGACACAGGACCAGAAAAGCAAATGGAGGAGGCCCTTAAGATTGGTTATCTATGCACTGCTGACCTTCCTTCCAAGAGACCAAGCATGCAGCAGATAGTTGGACTTCTTAAAGATATTGAACCTGCTGCTAATTAG 2565 0.4035 MGLGVFGSVLVLTLFFKHLACQQPNTDDFFVSDFFKKMGLASSKAYNFSSSVCSWQGVTCDAKKEHVVGLVVSGMGLSGPIPDTTIGKLSKIQSLDLSNNKITDLPSDFWSLSFLKSLNLSSNQISGSLTNNIGNFGLLEVFDLSSNNFSGEIPEAISSSVSLKVLKLDHNRFEQSIPSGILKCQSLVSIDLSSNQLSGALPDGFGAAFPKLTNLNLAGNNIYGRDSDISRLKSIVSLNISGNSFQGSVMSMFQGRLEVMDLSRNQFQGHISQVQSISNYNWSHLVYLDLSENQLSGEIFQNWNESQNLKHLNLAHNRFTRQKFPKIEILSRLEYLNLSKTSLIGYIPAEISQLSNLKTLDISMNHLIGQIPFLRNKNLQILDLSNNNLSGEVPPSVLEKLPWMEKYNFSYNNLTLCALEIKPAILKTAFFGLVNSCPIAANPSLFKKRATQHKGMKLALALTLSMICLLVGLLFLAVSRLRKTKSWPVKQASYKEEQNMSGPFSFHTDSTTWVADVKQPTSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQRTDDWSTDTWEEDDNNGIQNAGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSGLDEEIALSSPGYVPPEFSQPEFDTPSPKSDVYCFGVVLFELLTGKKPVGDEYPDEKEATLVSWVRGLVRKNIASRAIDPKIHDTGPEKQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPAAN. 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03455 854 PRINTS Leucine-rich repeat signature 285 298 - -
Seca6g03455 854 PRINTS Leucine-rich repeat signature 354 367 - -
Seca6g03455 854 FunFam Putative LRR receptor-like serine/threonine-protein kinase 508 622 - -
Seca6g03455 854 SUPERFAMILY Protein kinase-like (PK-like) 533 846 IPR011009 -
Seca6g03455 854 Pfam Leucine Rich Repeat 378 397 IPR001611 GO:0005515
Seca6g03455 854 ProSiteProfiles Leucine-rich repeat profile. 378 400 IPR001611 GO:0005515
Seca6g03455 854 FunFam Nuclear pore complex protein NUP107 32 178 - -
Seca6g03455 854 Gene3D Phosphorylase Kinase; domain 1 508 622 - -
Seca6g03455 854 SUPERFAMILY L domain-like 43 419 - -
Seca6g03455 854 ProSiteProfiles Protein kinase domain profile. 547 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03455 854 Pfam Protein tyrosine and serine/threonine kinase 551 844 IPR001245 GO:0004672|GO:0006468
Seca6g03455 854 Gene3D Transferase(Phosphotransferase) domain 1 623 854 - -
Seca6g03455 854 Gene3D Ribonuclease Inhibitor 372 428 IPR032675 -
Seca6g03455 854 Gene3D Ribonuclease Inhibitor 30 179 IPR032675 -
Seca6g03455 854 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Seca6g03455 854 Gene3D Ribonuclease Inhibitor 278 371 IPR032675 -
Seca6g03455 854 Gene3D Ribonuclease Inhibitor 180 277 IPR032675 -
Seca6g03455 854 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
Seca6g03455 854 Pfam Leucine rich repeat 162 222 IPR001611 GO:0005515
Seca6g03455 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 228 849 - -
Seca6g03455 854 FunFam Calmodulin-binding receptor kinase CaMRLK 255 373 - -
Seca6g03455 854 SMART LRR_typ_2 161 184 IPR003591 -
Seca6g03455 854 SMART LRR_typ_2 330 354 IPR003591 -
Seca6g03455 854 SMART LRR_typ_2 89 111 IPR003591 -
Seca6g03455 854 SMART LRR_typ_2 377 400 IPR003591 -
Seca6g03455 854 SMART LRR_typ_2 112 136 IPR003591 -
Seca6g03455 854 SMART LRR_typ_2 209 232 IPR003591 -
Seca6g03455 854 SMART LRR_typ_2 185 207 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03455 Seca-Chr6 101670057 101673852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03455 77 849 Receptor kinase-like Gene Family AT5G07280 31.274 2.20e-109 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Seca6g03455 PK_Tyr_Ser-Thr 3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03455 - - gmx:100807051 1490.32