Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03452 ATGGCCGAAGCTGAACAAAACCAAAAGCAAGAAAATGAAAAACCAGAAGAAAAGACGAGTCGACGAGTCACTGACTCGGCGCCCTCCACCGAGTTACGCACTTCCAGTCCTCCCGATGAAGCGCAATCGAATTCAGAAACCCTAGTTGTCCCCTCGCACGATCACACTGCTCATTTGGAGGGAAGCTCCACTGCGGATAAAGGTGGCAAAGACGAAAGTAAGGAGCCAGCTGGGCCTCCTGGCAAGGAAATTGTTGTGAAAGATGCAGTTGAGGCACCTCAAACACATCCAAAAAATCAACTTCAGGTGTCTGTGTGTTCAATGTCTGAGCTTTCACCAACTTCTGTTACACAATCTTTATCATCTGCCCCTAGTCCAACTGTGCCAGAAAAGAGACTGTCTCCTCCAAAGGCTGATAGTGTACATGTGCTTGAAGTAGACAAAAGAACTCCTGGTGGTAAAACCTTATCTTCTGTTTCTGTTGCAAGGGCATCTACATCTGATGGATACAATTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTACTCATTCAGATTGCTGTGCTAAGAAGGTTGAATGCTGCAACCATTTAGGCCATGTGATGGATATTGTTTATAGAAGTCAACACAGTCATGATCCCCCGCATAAAACTAATTCCTCTAGGGAAAGTAAATCCCTGCCTTCCAATGAACCTAATATAGAAAACACTATTCCAAAGCAGTCTATCAAAGTTCTAAATGATTCTGATCCATCACCTTCTCCTAAAAATCCTCTACAAGAAACACCTTGCAGTGCTGATAAGAAACGACAACACTCATCTAATGGTGAGAATGGTAAAGTTATTTTGAAGGAAGAGCATGTCAATGAACCAGAGCCAAAAAGAAGGCAAGTTGCATATGAATTCATTTTCTTCATAGGAAAATGA 957 0.4316 MAEAEQNQKQENEKPEEKTSRRVTDSAPSTELRTSSPPDEAQSNSETLVVPSHDHTAHLEGSSTADKGGKDESKEPAGPPGKEIVVKDAVEAPQTHPKNQLQVSVCSMSELSPTSVTQSLSSAPSPTVPEKRLSPPKADSVHVLEVDKRTPGGKTLSSVSVARASTSDGYNWRKYGQKQVKSPTGSRSYYRCTHSDCCAKKVECCNHLGHVMDIVYRSQHSHDPPHKTNSSRESKSLPSNEPNIENTIPKQSIKVLNDSDPSPSPKNPLQETPCSADKKRQHSSNGENGKVILKEEHVNEPEPKRRQVAYEFIFFIGK. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03452 318 Gene3D WRKY domain 154 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g03452 318 MobiDBLite consensus disorder prediction 25 51 - -
Seca6g03452 318 ProSiteProfiles WRKY domain profile. 161 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g03452 318 MobiDBLite consensus disorder prediction 219 305 - -
Seca6g03452 318 SMART WRKY_cls 166 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g03452 318 SUPERFAMILY WRKY DNA-binding domain 164 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g03452 318 MobiDBLite consensus disorder prediction 1 24 - -
Seca6g03452 318 Pfam WRKY DNA -binding domain 168 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g03452 318 MobiDBLite consensus disorder prediction 231 271 - -
Seca6g03452 318 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 88 305 IPR044810 GO:0003700
Seca6g03452 318 MobiDBLite consensus disorder prediction 59 78 - -
Seca6g03452 318 MobiDBLite consensus disorder prediction 1 139 - -
Seca6g03452 318 MobiDBLite consensus disorder prediction 273 305 - -
Seca6g03452 318 MobiDBLite consensus disorder prediction 95 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03452 Seca-Chr6 101643530 101646091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03452 99 306 WRKY Transcription Factor Family AT4G30935 40.476 4.26e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca6g03452 WRKY 4.7e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03452 - - lja:Lj0g3v0274859.1 386.726