Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03451 ATGAAGAAAGGTGATTTAACATGCTTGGATTCACCAGTAAAACCTGGAAAGAAACAAAAGTTTGTTGTACATGCAGCAGGGGATGTGGGGATATCAGGTGATGGATACAGATGGCGCAAGTACGGACAAAAAATGGTGAAGGGGAATCCACATCCCAGAAACTACTACAGATGCACTTCTGCTGGATGTCCTGTCCGAAAGCACATTGAGACTGCTGTGGATGACTCAAATGCTGTCATTATAACTTACAAAGGAGTACATGATCACGACATGCCTGTGCCTAAGAAACGACACGGCCAGCCAAATCCTCCGCTTGTTGCTGCTGCAGCACCTGCTTCAATGAACAATTCCCAGTTGAAGAAAACTGACTCGCCACAGAACCGGAAAACTTCTACTCAATGGTCTGTGGACACAGAAGGAGAATTAACCGGGGAAGCCTTGGACCTTGGTGGTGAGAAAGCAATAGAATCAGCTCGAACTCTTCTGAGTATAGGTTTTGAAATTAAACCATGCTGA 516 0.4516 MKKGDLTCLDSPVKPGKKQKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDDSNAVIITYKGVHDHDMPVPKKRHGQPNPPLVAAAAPASMNNSQLKKTDSPQNRKTSTQWSVDTEGELTGEALDLGGEKAIESARTLLSIGFEIKPC. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03451 171 SMART WRKY_cls 32 91 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g03451 171 Gene3D WRKY domain 17 93 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g03451 171 MobiDBLite consensus disorder prediction 92 136 - -
Seca6g03451 171 MobiDBLite consensus disorder prediction 111 136 - -
Seca6g03451 171 SUPERFAMILY WRKY DNA-binding domain 27 92 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g03451 171 FunFam WRKY transcription factor 17 93 - -
Seca6g03451 171 ProSiteProfiles WRKY domain profile. 27 92 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g03451 171 Pfam WRKY DNA -binding domain 34 89 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g03451 171 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 126 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03451 Seca-Chr6 101640346 101643449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03451 34 92 WRKY Transcription Factor Family AT4G30935 52.542 8.69e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca6g03451 WRKY 1.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03451 - - gmx:100782194 319.316