Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03442 ATGAAGGAGAAGAGAGTTAGTAATATTTATATGTTGGATGACTTGGATTCTAGATTATCATCATCTTCTGATGCTGGAGTTAAAACATGTGGATTTAGTATTGATAAATTAACCCATGGTGGCCATGGAAACAGTACGACCTCTAGGTCTTTTAAAAGAGGAATGAAAAAGGGTTCTGAAGGACTGAAGTCAATTGGTCGATCACTAGGATTTGGGGTATCTAGGGCAGTGTTCCCAGAAGATCTTAAAGTTTCAGAAAAGAAGATATTCGACCCTCAAAATAAATTTTTGCTCTTATGGAATAAGCTTTTTGTTATCTCATGCATTTTGGCTGTGTCTGTGGATCCACTGTTTTTTTATCTCCCTGTCATCAGTGATTCTTTACACTGTCTTGGTATAGACCGGAAGTTGGCAATTACAGTTACCACCTTGAGGACAATCATTGATGCTTTCTATCTTATACACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCATCTCGAGTTTTTGGACGGGGTGAGCTTGTGATAGATCCAGCACAGATAGCCAAACGATACTTACGGCGGTATTTCATCATTGATTTCTTGTCAGTGTTGCCCTTACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTCACAACAAAACGGGCCTTGCTGTTCATTATCTTGCTTCAGTATATTCCTAGATTTCTCCGTATGGTACCATTGACTTCTGAACTTAAGAGAACAGCTGGTGTCTTCGCTGAAACTGCTTGGGCAGGTGCTGCGTATTATTTGCTATTATTCATGCTTGCCAGTCATATAGTTGGGTCTTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTTTTGCTGGCAGAAGGCTTGTAGTGACAATGGGTACAATAAAAAATTCTTGTATTGTGGCAACCAATACATGGATGGTTATAGTGCTTGGCAGAATAAAAGTGAAGATATTCTCACCTCCCGGTGCTCTCCAGATGATGATGATAATCCACCTTTTGACTATGGAATTTTCACACAAGCCTTGAAATCTGGTATTGTTTCATCTAAGAAGTTCTTCTCTAAGTACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGGCTTGAAACTAGCACCTACCCTGGGGAGGTTATCTTTTCAATAGCATTAGCCATAGCTGGCCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACGTATCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAGCTCAGAGAGCGCGTGAGACGATATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGAATCTTTGGTTCAGAGTCTCCCAAAGGATCTTCGAAGAGACATTAAGCGTCACCTCTGTCTGGCTTTAGTGAGAAGGGTTCCATTATTTGAGAGCATGGATGAGAGATTGCTGGATGCCATATGTGAGAGACTGAAGCCATGTTTATTTACTGAGAGTACTTATATTGTCCGGGAAGGAGATCCAGTTGATGAGATGCTTTTTATCATACGCGGTCGCCTTGAGAGTGTTACCACAGACGGTGGGAGGAGTGGGTTTTTTAATCGCGGTTTTTTAAAAGAGGCTGACTTCTGTGGAGAGGAGCTTCTAACCTGGGCACTGGATCCCAAATCTGGCTCTAACCTCCCATCTTCTACTCGAACAGTTAAGGCTTTAACTGAGGTTGAGGCTTTTGCTTTAACTGCTGAAGAGTTAAAATTTGTTGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACCTTCCGCTTTTACTCCCAACAATGGAGAACATGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCCAAAAGGAAAATGATGGAGCTTCGTCGAAAGGAAGAACCTGAGGAGTCAGAAGGAACTCGCAGCAATGCCAGTGGCAGTTCCTACAGCCTTGGTGCCACCCTCTTGGCCTCAAGATTTGCTGCAAATGCTCTTCGTGGTGTACATCGCAATAGGAATGCTAAGACTGCCAGGGAGTTAGTGAAACTACAGAAACCTCCAGAGCCTGACTTTACTGCTGATGATATGTAA 2172 0.4282 MKEKRVSNIYMLDDLDSRLSSSSDAGVKTCGFSIDKLTHGGHGNSTTSRSFKRGMKKGSEGLKSIGRSLGFGVSRAVFPEDLKVSEKKIFDPQNKFLLLWNKLFVISCILAVSVDPLFFYLPVISDSLHCLGIDRKLAITVTTLRTIIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDFLSVLPLPQIVVWRFLQRSKGSDVLTTKRALLFIILLQYIPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWQKACSDNGYNKKFLYCGNQYMDGYSAWQNKSEDILTSRCSPDDDDNPPFDYGIFTQALKSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLETSTYPGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKMMELRRKEEPEESEGTRSNASGSSYSLGATLLASRFAANALRGVHRNRNAKTARELVKLQKPPEPDFTADDM. 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03442 723 FunFam Cyclic nucleotide-gated ion channel 1 424 488 - -
Seca6g03442 723 Pfam Cyclic nucleotide-binding domain 519 608 IPR000595 -
Seca6g03442 723 Gene3D - 102 422 - -
Seca6g03442 723 SUPERFAMILY cAMP-binding domain-like 426 617 IPR018490 -
Seca6g03442 723 SUPERFAMILY Voltage-gated potassium channels 91 419 - -
Seca6g03442 723 MobiDBLite consensus disorder prediction 702 723 - -
Seca6g03442 723 FunFam Cyclic nucleotide-gated ion channel 1 495 613 - -
Seca6g03442 723 SMART cnmp_10 497 628 IPR000595 -
Seca6g03442 723 ProSiteProfiles IQ motif profile. 633 662 IPR000048 GO:0005515
Seca6g03442 723 Gene3D Jelly Rolls 495 615 IPR014710 -
Seca6g03442 723 CDD CAP_ED 497 628 IPR000595 -
Seca6g03442 723 ProSiteProfiles cAMP/cGMP binding motif profile. 497 627 IPR000595 -
Seca6g03442 723 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 81 718 - -
Seca6g03442 723 Gene3D Helix hairpin bin 425 488 - -
Seca6g03442 723 Pfam Ion transport protein 99 423 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03442 Seca-Chr6 101561147 101572872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03442 18 721 Ion Channels AT5G57940 80.453 0.0 1160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03442 K05391 - gmx:100820202 1300.03