Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03436 ATGATCATGGATATAAAGGGTGCAATGATGCCAATATTCCATTATGATCTATTCTTCTTGTGCTTAGTAATCTTTTCATTATTTTCATGCATCCTTGGTGTGCCAAAGGAGCAAGAGCTAGATCGAATCTCAGCTCTACCAGGGCAGCCACCAGTGACATTTTCTCAGTTCTCTGGTTATGTCACTGTCAATGAGCAACATGGCAGAGCACTCTTCTACTGGTTCATTGAAGCCACCACTTCCCCTGAGAATAAACCTCTTGTTCTCTGGCTCAATGGAGGGCCTGGTTGCTCATCAGTGGCATATGGGGCATCAGAGGAAATTGGACCATTCCGTATAAACAAAACTGGCTCTTCTCTGTACCTTAACAACTATGCATGGAATAAAGAAGCAAATATCCTCTTTCTTGAATCACCTGCTGGAGTTGGTTTCTCATACACAAATACCAGTTCTGACCTCAAAACTTCTGGGGACAAAAGGACAGCTCAGGATGCTCTGATATTTCTACTTAGATGGATGGAAAGATTTCCACAATATAAATATAGGGAATTTTACATTGCTGGGGAGAGCTATGCAGGGCACTATGTCCCCCAGTTGGCTAAGAAAATCCATGATTATAATAAACAAAATCCCCATATCCTTAATCTTAAAGGGTTCATTGTGGGAAATGCTGTGACTGATGACTACTATGATGGGGTGGGAACCGTTACATATTGGTGGAGCCACTCTATGATATCTGATCAATCATACAAATCTATCCTCAAATATTGTAATTTCACTGAAAGAAAAACAACTAAAAAATGTGATGATGCTGTGAGTTATGCTGTGAATCATGAATTTGGGAACATTGATCAGTACAGTATCTATACCCCTGCATGCACAACACCACACAATGATACTCTAAGGCACGTTAGGTTCAAGAGTACAATGTTACATAGGATTGCTGGGTATGATCCTTGTACTGAAGATTATGCAGAGAAATATTATAATCGCCATGATGTGCAGAAAGCAATGCATGCAAATGTTACAAACATTCCTTACAAATGGACTGCTTGCAGTGGCGTGCTCAATAAACATTGGCAGGATTCTGAGGTTTCTATATTGCCCATTTACAAAGAGTTAATTGCAGCGGGTTTGAGAATCTGGGTTTTCAGTGGAGACACAGATTCGGTGGTTCCAGTAACTGCTACGAGGTTTTCTCTCAACCATCTCAACCTCACCATCAAAACTCGTTGGTATCCATGGTACTCAGGGGAACAGGTAGGAGGATGGACAGAGGTGTATGATGGATTAACATTTGCAACTGTAAGAGGGGCTGGACATGAAGTTCCATTATTTCAGCCAAAACGAGCTTACATACTTTTCAGGTCATTTTTGGCAGGGAAACAACTACCAAAATCTTGA 1404 0.4095 MIMDIKGAMMPIFHYDLFFLCLVIFSLFSCILGVPKEQELDRISALPGQPPVTFSQFSGYVTVNEQHGRALFYWFIEATTSPENKPLVLWLNGGPGCSSVAYGASEEIGPFRINKTGSSLYLNNYAWNKEANILFLESPAGVGFSYTNTSSDLKTSGDKRTAQDALIFLLRWMERFPQYKYREFYIAGESYAGHYVPQLAKKIHDYNKQNPHILNLKGFIVGNAVTDDYYDGVGTVTYWWSHSMISDQSYKSILKYCNFTERKTTKKCDDAVSYAVNHEFGNIDQYSIYTPACTTPHNDTLRHVRFKSTMLHRIAGYDPCTEDYAEKYYNRHDVQKAMHANVTNIPYKWTACSGVLNKHWQDSEVSILPIYKELIAAGLRIWVFSGDTDSVVPVTATRFSLNHLNLTIKTRWYPWYSGEQVGGWTEVYDGLTFATVRGAGHEVPLFQPKRAYILFRSFLAGKQLPKS. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03436 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 197 IPR001563 GO:0004185|GO:0006508
Seca6g03436 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 136 146 IPR001563 GO:0004185|GO:0006508
Seca6g03436 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 135 IPR001563 GO:0004185|GO:0006508
Seca6g03436 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 431 444 IPR001563 GO:0004185|GO:0006508
Seca6g03436 467 ProSitePatterns Serine carboxypeptidases, histidine active site. 431 448 IPR033124 GO:0004185
Seca6g03436 467 FunFam Carboxypeptidase 316 464 - -
Seca6g03436 467 Pfam Serine carboxypeptidase 48 460 IPR001563 GO:0004185|GO:0006508
Seca6g03436 467 ProSitePatterns Serine carboxypeptidases, serine active site. 186 193 IPR018202 GO:0004185
Seca6g03436 467 Gene3D - 320 357 - -
Seca6g03436 467 Gene3D - 367 461 - -
Seca6g03436 467 FunFam Carboxypeptidase 37 295 - -
Seca6g03436 467 FunFam Carboxypeptidase 367 461 - -
Seca6g03436 467 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Seca6g03436 467 SUPERFAMILY alpha/beta-Hydrolases 41 464 IPR029058 -
Seca6g03436 467 Gene3D alpha/beta hydrolase 37 295 IPR029058 -
Seca6g03436 467 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 43 448 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03436 Seca-Chr6 101512925 101519808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03436 325 464 Calmodulin-binding Proteins AT2G22960 31.206 1.96e-16 75.5