Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03426 ATGGCCTCAAAAACTAGAAGTTCTACCATTCAAGTGTCTCTCATAGTAGCTTTTCTCTTCGCCAATGTTGTTTTATCTGATGATAGTTTACCAATTCCCGCTGACAAGTCCCAATTGGAAACTTGGTTTAATAGCAACGTGGCGCCTTTAGGTCAAAGAAAAAGCAGCTTGGACCCTGCACTTGTGGCTGCAGAGGACGATGCTAAGGTTGTGAAGACCATCACCGATGCCATAGACAACATACCTAATGGAAACACCAAGCGTGTGATTGTGTATATTGGCGGTGCAAATTATAATGAGAAAATCAAAATTGAAAGGACAAAACCTTTTGTCACCTTGTATGGGGAACCAGAGAACATGCCAAACTTGACGTATGGGGGCACTGCACAACAATATGGCACTGTTGACAGTGCAACTTTGATTGTCGAATCAGATTACTTTGTGGCCGCTAACATCATAATCTCGAATTCTGCACCAAGACCTGATGGAAAAAGGCAAGGAGCTCAAGCGGTTGCATTGAGAATTTCTGGTGACAAAGCAACATTTTATAATTGCAAGATACTTGGATTCCAAGACACTGTTTGTGATGATAGGAATAGACATTTTTTCAAAAATTGCTTAATTCAAGGAACAGTGGATTTTATTTTTGGAAGTGGGAAGTCACTATATTTGAACACTGAATTGAGAGCACTTGGCGATAGTGGGATGACTGTGATAGTGGCACAAGCAAGAAAAAGTGAGACGGAGGATAATGTCTACTCATTTGTGCATTGCAGTATTACTGGAACCGGAACTGGCACTTTCTTAGGTAGAGCGTGGATGTCTCATTCCAAAGTGATATTTGCTTACACAACTATGAGCAGTATTGTGAATCCAGCAGGGTGGAGTAACAACAGACACCCTGAATATGACAGTACTATGTATTTTGGAGAGTACCGGAATGAAGGACCAGGTGCAGATCCCAAAGTGCGTGCCTCTTTCACAAAGCAACTAAGTGATGCAAAGGTCAAATCTTTCATAACTCTTGAAATGATTGAAGGCTCTAAATGGTTACTTCCTCCTCCAACTCCCAAAGTGTCTCTCATAGTAGCTTTTCTCTTCGCCAATGTTGTTTTATCTGATGATAGTTTACCAATTCCCGCTGACAAGTCCCAATTGGAAACTTGGTTTAATAGCAACGTGGCGCCTTTAGGTCAAAGAAAAAGCAGCTTGGACCCTGCACTTGTGGCTGCAGAGGACGATGCTAAGGTTGTGAAGGTCATGCAAGATGGCTCTGGGGATTTCAAGACCATCACCGATGCCATAGACAACATACCTAATGGAAACACCAAGCGTGTGATTGTGTATATTGGCGGTGCAAATTATAATGAGAAAATCAAAATTGAAAGGACAAAACTTTTTGTCACCTTGTATGGGGAACCAGAGAACATGCCAAACTTGACGTATGGGGGCACTGCACAACAATATGGCACTGTTGACAGTGCAACTTTGATTGTCGAATCAGATTACTTTGTGGCCGCTAACATCATAATCTCGAATTCTGCACCAAGACCTGATGGAAAAAGGCAAGGAGCTCAAGCGGTTGCATTGAGAATTTCTGGTGACAAAGCAACATTTTATAATTGCAAGATACTTGGATTCCAAGACACTGTTTGTGATGATAGGAATAGACATTTTTTCAAAAATTGCTTAATTCAAGGAACAGTGGATTTTATTTTTGGAAGTGGGAAGTCACTATATTTGAACACTGAATTGAGAGCACTTGGCGATAGTGGGATGACTGTGATAGTGGCACAAGCAAGAAAAAGTGAGACGGAGGATAATGTCTACTCATTTGTGCATTGCAGTATTACTGGAACCGGAACTGGCACTTTCTTAGGTAGAGCGTGGATGTCTCATTCCAAAGTGATATTTGCTTACACAACTATGAGCAGTATTGTGAATCCAGCAGGGTGGAGTAACAACAGACACCCTGAATATGACAGTACTATGTATTTTGGAGAGTACCGGAATGAAGGACCAGGTGCAGATCCCAAAGTGCGTGCCTCTTTCACAAAGCAACTAAGTGATGCAAAGGTCAAATCTTTCATAACTCTTGAAATGATTGAAGGCTCTAAATGGTTACTTCCTCCTCCAACTCCCAAAGTCTAA 2151 0.4156 MASKTRSSTIQVSLIVAFLFANVVLSDDSLPIPADKSQLETWFNSNVAPLGQRKSSLDPALVAAEDDAKVVKTITDAIDNIPNGNTKRVIVYIGGANYNEKIKIERTKPFVTLYGEPENMPNLTYGGTAQQYGTVDSATLIVESDYFVAANIIISNSAPRPDGKRQGAQAVALRISGDKATFYNCKILGFQDTVCDDRNRHFFKNCLIQGTVDFIFGSGKSLYLNTELRALGDSGMTVIVAQARKSETEDNVYSFVHCSITGTGTGTFLGRAWMSHSKVIFAYTTMSSIVNPAGWSNNRHPEYDSTMYFGEYRNEGPGADPKVRASFTKQLSDAKVKSFITLEMIEGSKWLLPPPTPKVSLIVAFLFANVVLSDDSLPIPADKSQLETWFNSNVAPLGQRKSSLDPALVAAEDDAKVVKVMQDGSGDFKTITDAIDNIPNGNTKRVIVYIGGANYNEKIKIERTKLFVTLYGEPENMPNLTYGGTAQQYGTVDSATLIVESDYFVAANIIISNSAPRPDGKRQGAQAVALRISGDKATFYNCKILGFQDTVCDDRNRHFFKNCLIQGTVDFIFGSGKSLYLNTELRALGDSGMTVIVAQARKSETEDNVYSFVHCSITGTGTGTFLGRAWMSHSKVIFAYTTMSSIVNPAGWSNNRHPEYDSTMYFGEYRNEGPGADPKVRASFTKQLSDAKVKSFITLEMIEGSKWLLPPPTPKV. 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03426 716 ProSitePatterns Pectinesterase signature 2. 208 217 IPR033131 -
Seca6g03426 716 SUPERFAMILY Pectin lyase-like 62 355 IPR011050 -
Seca6g03426 716 ProSitePatterns Pectinesterase signature 2. 565 574 IPR033131 -
Seca6g03426 716 SUPERFAMILY Pectin lyase-like 415 710 IPR011050 -
Seca6g03426 716 FunFam Pectinesterase 413 710 - -
Seca6g03426 716 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 411 708 - -
Seca6g03426 716 Gene3D - 54 355 IPR012334 -
Seca6g03426 716 Gene3D - 413 711 IPR012334 -
Seca6g03426 716 FunFam Pectinesterase 59 353 - -
Seca6g03426 716 Pfam Pectinesterase 62 347 IPR000070 GO:0030599|GO:0042545
Seca6g03426 716 Pfam Pectinesterase 418 704 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03426 Seca-Chr6 101427504 101438309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03426 359 712 Carbohydrate Esterase AT1G69940 55.462 7.75e-145 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03426 K01051 - gmx:100786427 588.571