Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03407 ATGATCAGGCATCGATGGACAGGACGATATGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGGTTTTCATTGTGCTTATGACGATGAAGAGGCTGCAGCACATGCTTATGATCTAGCCGCATTGAAATATTGGGGTCCAGACACCATCCTTAACTTTCCGTTATCAACCTACCAGAATGAACTGAAAGAAATGGACGGTCAATCAAGGGAGGAGTATATTGGATCATTAAGGAGGAAAAGCAGCGGTTTTTCTCGTGGAGTTTCTAAATACAGAGGTGTTGCAAGACACCATCATAACGGAAGATGGGAGGCTCGCATTGGCAGGGTTTTTGGCAACAAATATCTTTACCTCGGCACTTATGCTACACAAGAAGAAGCTGCCACAGCATATGATATGGCAGCTATTGAATATCGTGGACTCAATGCCGTTACCAATTTTGACCTTAGCCGTTACATTAAATGGCTTAAGCCTAATCACAACAACACAATTAGCACTAATCTTAATGTTTCTTCTAATTCAATTAGTAACACCAACTTCATCCCAAACCCTAATCAAGAGCAAGGACTTAATTTCTTCCACAACCAAGAGCCATCATTTACCAATGGAGAAGAAGTGATGAGTACTATTGCAATGACACAGCCTCGTCCAACTACTGCCACGTCAGCCCTAGGACTTTTGCTTCAATCATCCAAGTTTAAGGAGATGATGGAGATGACCTCCGCCGTGGATTTGTCGACCCCGCCGGAGTTGGAGTTGCCGGCGTGCACATTTCCTGATGACATTCAAACATACTTTGAGTGTGAAGATTCTAGCAAATTTGGAGGAGGGGGTGATGATATGATTTTCAGTGAGCTCAACTCTTTTGTGCCCCCTATATTCCATTGTGATGACTTTGAGGGCTTGAAGTTCTAG 942 0.4321 MIRHRWTGRYEAHLWDKNCWNESQNKKGRQGFHCAYDDEEAAAHAYDLAALKYWGPDTILNFPLSTYQNELKEMDGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNHNNTISTNLNVSSNSISNTNFIPNPNQEQGLNFFHNQEPSFTNGEEVMSTIAMTQPRPTTATSALGLLLQSSKFKEMMEMTSAVDLSTPPELELPACTFPDDIQTYFECEDSSKFGGGGDDMIFSELNSFVPPIFHCDDFEGLKF. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03407 313 Gene3D AP2/ERF domain 1 65 IPR036955 GO:0003700|GO:0006355
Seca6g03407 313 Gene3D AP2/ERF domain 98 159 IPR036955 GO:0003700|GO:0006355
Seca6g03407 313 SMART rav1_2 99 163 IPR001471 GO:0003700|GO:0006355
Seca6g03407 313 SMART rav1_2 3 69 IPR001471 GO:0003700|GO:0006355
Seca6g03407 313 Pfam AP2 domain 3 55 IPR001471 GO:0003700|GO:0006355
Seca6g03407 313 Pfam AP2 domain 98 149 IPR001471 GO:0003700|GO:0006355
Seca6g03407 313 SUPERFAMILY DNA-binding domain 98 159 IPR016177 GO:0003677
Seca6g03407 313 ProSiteProfiles AP2/ERF domain profile. 1 63 IPR001471 GO:0003700|GO:0006355
Seca6g03407 313 SUPERFAMILY DNA-binding domain 3 65 IPR016177 GO:0003677
Seca6g03407 313 FunFam AP2-like ethylene-responsive transcription factor 98 159 - -
Seca6g03407 313 ProSiteProfiles AP2/ERF domain profile. 99 157 IPR001471 GO:0003700|GO:0006355
Seca6g03407 313 CDD AP2 98 159 IPR001471 GO:0003700|GO:0006355
Seca6g03407 313 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03407 Seca-Chr6 101195406 101199144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03407 1 161 AP2-EREBP Transcription Factor Family AT5G57390 69.565 1.63e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Seca6g03407 AP2 1.3e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03407 K09285 - gmx:100804555 501.901