Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03403 ATGATGGGGCAGGGTGCACCAGCTGCAGATCTACGTGCTCTGATGATTGTGTGTGCAGTGATCCTAGACATGAAGGATAAAGAGATATTGATTCCTGCTACTTCTTTTGAGTTTGAGCTAATAAATTACAAAACAATGCTTAGTTGCTTACCTTCTCCTTGTGGATGTGGATTAGAGACTGAACTTTGTGGATGGGGAGTAGAGGCCGCTGAAGCAATCAATAAAGGCGGATTTATAATTGAGTATATTGGAGAAGAAATGTTTTCTGCTGCAGTCATTGATGATGCTTTATGTGAAAAAAGACTTTGGGACATGAAATACAGGGGTGTACAGAATTTTTACATGTGTGAGATTCGGAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATACATCCCGCTTTTTAAACCATAGCTGCGATCCCAACTGTATTTTGGAAAAGTGGCAAGTTGATGGTGAAACACGAGTGGGTGTATTTGCTGCTCGTTCAATAGAAGTTGGAGAGCCGCTAACATACGATTACAGATTTGTGCAATTTGGTCCAGAGGTGAAATGCCACTGTGGTGCCTCAAACTGTCAAGGCTTTTTAGGTACGAAAAAGAAAATTGGCAAGTTAGACCTCTGTTGGGGCTCCAAACGTAAGCGAACGTCAAATTCTTGCATTACCATAGTAACAGCTATATGA 687 0.409 MMGQGAPAADLRALMIVCAVILDMKDKEILIPATSFEFELINYKTMLSCLPSPCGCGLETELCGWGVEAAEAINKGGFIIEYIGEEMFSAAVIDDALCEKRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCILEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCHCGASNCQGFLGTKKKIGKLDLCWGSKRKRTSNSCITIVTAI. 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03403 228 SMART PostSET_3 182 198 IPR003616 -
Seca6g03403 228 Gene3D SET domain 18 215 IPR046341 -
Seca6g03403 228 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 58 227 IPR025787 -
Seca6g03403 228 Pfam SET domain 64 175 IPR001214 GO:0005515
Seca6g03403 228 PANTHER SET DOMAIN PROTEINS 41 218 - -
Seca6g03403 228 SUPERFAMILY SET domain 36 195 IPR046341 -
Seca6g03403 228 ProSiteProfiles SET domain profile. 56 176 IPR001214 GO:0005515
Seca6g03403 228 SMART set_7 52 182 IPR001214 GO:0005515
Seca6g03403 228 ProSiteProfiles Post-SET domain profile. 182 198 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03403 Seca-Chr6 101179398 101181888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03403 58 198 C2H2 Transcription Factor Family AT2G23740 35.625 8.09e-19 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca6g03403 SET 9.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03403 - - gmx:100791481 321.242