Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03401 ATGTGGTCAAACCAACATGCTCGCTGTCATTGTTCCATAATTATGGCTGCCAATTCGGTTCTTCTTCTCCTCCTCTTTCTTTTTAGTGCTGCTGCTCTTTGTTCCTCTTCCGAGCCTCGCAACCACGAAGTGGAGGCTTTGATGAGCATAAGAGCAGAACTGAATGATCCACATGGTGTTCTGAGCAACTGGGATGAATTCTCCGTCGACCCTTGTAGTTGGGCTATGATCACTTGTTCCTCTGATTACCTTGTTATAGGCCTAGGAGCACCAAGTCAATCTCTCTCTGGAACTTTGTCTCCAGCAATTGGAAATCTCACGAATCTTCGACAAGTGTTATTACAGAACAACAACATCTCTGGCAAAATCCCATCAGAGCTTGGTGTGCTTCCCAAGCTTCAGACTTTAGATCTTTCCAATAATAGGTTCTCTGGGGTGATTCCTGGGTCTCTCGGCCAGTTGAATAGTCTCCAGTATCTGAGGCTGAACAACAATAGCTTGTCTGGGCCATTTCCTGTGTCACTAGCCAAAATCCCACAACTTGCCTTTTTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAAGTTTCCAGCTAGATCATTCAATGTTGTGGGAAACCCATTAGTTTGTGGGAGCAGCTCTACTGAAGGTTGCTCTGGTTCAGCAACCTTCATGCCCATGTCTTTCTCTCTAACATCATCACGAGGGAAAAACAAGTCCAAGAAACTAGCAATTGTGCTTGGGATCAGCCTTGGTTGTGTTTGTCTCGTATTTCTGTTTTTTGGGCTTTTTTGGTATAGAAAGAAAGGGCAGAACCAAGCAATCCTGTACCTTGATTATCATCTGGAAGAGGGCCTTGTTAGCTTGGGAAATCTAAAACATTTCACTTTCAGAGAGCTCCAAACTGCAACAGATAATTTCAGCTCCAAGAACTTACTTGGTGCTGGAGGCTTTGGCAATGTTTATAGGGGGAAACTTGGAGATGGCACAATGGTGGCAGTGAAAAGGCTGAAGGATGTGACTGGAAGTGCTGGTGAATCACAGTTCCGAACAGAAGTGGAGATGATCAGCTTAGCAGTTCACCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTAATGAAAAGCTGCTGATTTATCCTTTTATGTCTAATGGCAGTGTGGCCACAAGGCTTAAAGGTAAACCCGCTTTAGATTGGAACACAAGAAAGAGAATAGCAATTGGAGCTGCCAGAGGTCTTCTCTATCTTCATGAGCAATGTGATCCTAAGATAATTCACAGAGATGTGAAGGCTGCTAATGTGCTTCTGGATGACTATTGTGAAGCTGTTGTTGGCGATTTTGGCCTTGCAAAGCTCCTTGACCATGCCGACTCCCATGTCACTACTGCTGTCCGTGGCACTGTTGGACACATTGCACCAGAGTACCTCTCCACTGGCCAATCTTCTGAGAAAACTGATGTATTTGGATTTGGCATTCTCTTGTTAGAGCTCATAACTGGAATGACAGCTCTAGAGTTTGGAAAAACACTTAATCAAAAAGGAGCAATGCTAGAGTGGGTCAGGAAAATTCAACATGAAAAGAAAGTTGAAGTGTTGGTGGACAAGGAACTAGGGAACAACTATGACAGAATAGAAGTGGGGGAGATGCTGCAAGTAGCTTTACTTTGTACTCAATATTTACCAGCCCACCGTCCCAAAATGTCTGAAGTGGTTCGAATGCTTGAAGGTGATGGTCTTGCTGAGAAGTGGGCAGCATCACATAATCATGGTGGTCTCAGTTTGCAAACCACCCTTAACAGTAACTGTAGCAAAAAAGGTTCATCCCACCCTACCACTGCTTCAAACCATGATGACAATAATGCTCATGATCGTTCCAGCACATTTGGCATGACAATGGATGATGACGATGGTGATGAACATTCCTTGGATTCCTATGCCATGGAACTCTCTGGTCCTAGATAA 1974 0.4412 MWSNQHARCHCSIIMAANSVLLLLLFLFSAAALCSSSEPRNHEVEALMSIRAELNDPHGVLSNWDEFSVDPCSWAMITCSSDYLVIGLGAPSQSLSGTLSPAIGNLTNLRQVLLQNNNISGKIPSELGVLPKLQTLDLSNNRFSGVIPGSLGQLNSLQYLRLNNNSLSGPFPVSLAKIPQLAFLDLSYNNLSGPLPKFPARSFNVVGNPLVCGSSSTEGCSGSATFMPMSFSLTSSRGKNKSKKLAIVLGISLGCVCLVFLFFGLFWYRKKGQNQAILYLDYHLEEGLVSLGNLKHFTFRELQTATDNFSSKNLLGAGGFGNVYRGKLGDGTMVAVKRLKDVTGSAGESQFRTEVEMISLAVHRNLLRLIGYCATPNEKLLIYPFMSNGSVATRLKGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTLNQKGAMLEWVRKIQHEKKVEVLVDKELGNNYDRIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLAEKWAASHNHGGLSLQTTLNSNCSKKGSSHPTTASNHDDNNAHDRSSTFGMTMDDDDGDEHSLDSYAMELSGPR. 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03401 657 SMART serkin_6 309 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03401 657 Gene3D Phosphorylase Kinase; domain 1 282 385 - -
Seca6g03401 657 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Seca6g03401 657 SMART LRR_typ_2 130 153 IPR003591 -
Seca6g03401 657 SMART LRR_typ_2 154 185 IPR003591 -
Seca6g03401 657 SMART LRR_typ_2 106 128 IPR003591 -
Seca6g03401 657 MobiDBLite consensus disorder prediction 620 639 - -
Seca6g03401 657 MobiDBLite consensus disorder prediction 599 657 - -
Seca6g03401 657 SUPERFAMILY Protein kinase-like (PK-like) 290 579 IPR011009 -
Seca6g03401 657 Gene3D Ribonuclease Inhibitor 40 222 IPR032675 -
Seca6g03401 657 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Seca6g03401 657 PRINTS Leucine-rich repeat signature 133 146 - -
Seca6g03401 657 PRINTS Leucine-rich repeat signature 178 191 - -
Seca6g03401 657 MobiDBLite consensus disorder prediction 599 619 - -
Seca6g03401 657 Gene3D Transferase(Phosphotransferase) domain 1 386 595 - -
Seca6g03401 657 FunFam Somatic embryogenesis receptor kinase 1 280 385 - -
Seca6g03401 657 Pfam Protein kinase domain 310 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03401 657 FunFam Putative LRR receptor-like serine/threonine-protein kinase 40 222 - -
Seca6g03401 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Seca6g03401 657 ProSiteProfiles Protein kinase domain profile. 309 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03401 657 FunFam Somatic embryogenesis receptor-like kinase 1 386 597 - -
Seca6g03401 657 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 22 589 - -
Seca6g03401 657 SUPERFAMILY L domain-like 40 205 - -
Seca6g03401 657 Pfam Leucine rich repeat 131 191 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03401 Seca-Chr6 101141041 101146241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03401 12 657 Receptor kinase-like Gene Family AT5G16000 63.897 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca6g03401 Pkinase 8.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03401 - - lja:Lj6g3v1048910.1 1115.52