Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03391 ATGTTGATAACGGTTAGGGAAGCTTCTTCTTCTCCCCTTTGTTTCTGGCTCAATCCTATCGTCGCAAAACGCTCTAAAACATTCAAAACTTCCATTTGCCAAGCTAGTTTTTCTGTCCAGAGAAGACCCAACAACACCAACCATTCATGGAACCCTGGTTATCTTTCTACCAGCTGTGAGGCAGCGAATTTTGATCCCTTGGGTATTAACAGAGATTTATCTTCTTCTCTGAGTTCTACCTGGAAAGATCTGGTATGCTTGTTTTCACAAACATTTGAGAGTTCTTCAAGTACCGAAAAGGAAAAACCTAACTCACCTCGAGGAGTGGCAGCTGCTATAGAGGATAGTTCAATTGATTTTGGCGACTTCTTTAAAGGTCCACTGCCAGGGAAGTTTCTCAAGCTTCTAGGGTTTCTTGCTTTGTCACGGCTTGGTGTGTACATACCTCTAGGTGGAGTTAATAGGGAGGCTTTTGTTGGAAATTTGGATCAGAACAGTTTGTTAAGCACTCTGGACTCATTTTCTGGTGGAGGTATTGGTAGGCTTGGGCTATGTTCCCTTGGTATTGTTCCCTTCATCAATGCACAGATTGTTTTCCAGCTTCTTGCACAAATATATCCCAAGTTGCAAGATCTTCAAAAAAGAGAAGGCGAGGCTGGAAGAAAGAAAATTCTTCAATACACTCGATATGCTTCAGTTGGATTTGCAATTGTACAGGCAATTGGCCAAGTTCTTTACCTACGTCCCTATGTTAATGACTTTTCTACAGAGTGGGTTCTTTCTTCTGTTATCTTGTTGACACTTGGCTCTGTGTTTACAACGTACATCGGTGAACGAATTACTGACCTAAAACTTGGGAATGGCACCTCTCTTTTGATATTCACAAACATTATCTCCTACTTGCCAGCTTCTTTTGGTCGGACATTTGCACAAGCATTTAATGATGCTAACTACGTTGGACTTGCTACAATCATTGTGTCCTTCTTTCTGTTGGTAGTTGGTATTGTCTATGTTCAGGAAGCAGAGAGAAAAATTCCTCTTAACTATGCTTCTAGATTCACTAGCAGAACCAGTGGACTTGAAAAATCTGCTTACCTACCCTTTAAGGTCCTCTCCTCTCTTCTCTTTTCCCAACTTCTTGTTTTTATGTTACTGCAGTCTCTTCCTTTGAATTATCTGTTTTATTTTATTATTCGTGAAATTTAG 1206 0.4046 MLITVREASSSPLCFWLNPIVAKRSKTFKTSICQASFSVQRRPNNTNHSWNPGYLSTSCEAANFDPLGINRDLSSSLSSTWKDLVCLFSQTFESSSSTEKEKPNSPRGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGLCSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLSSVILLTLGSVFTTYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTFAQAFNDANYVGLATIIVSFFLLVVGIVYVQEAERKIPLNYASRFTSRTSGLEKSAYLPFKVLSSLLFSQLLVFMLLQSLPLNYLFYFIIREI. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03391 401 PRINTS Preprotein translocase SecY subunit signature 282 305 - -
Seca6g03391 401 PRINTS Preprotein translocase SecY subunit signature 182 202 - -
Seca6g03391 401 PRINTS Preprotein translocase SecY subunit signature 256 281 - -
Seca6g03391 401 PRINTS Preprotein translocase SecY subunit signature 132 150 - -
Seca6g03391 401 PRINTS Preprotein translocase SecY subunit signature 224 247 - -
Seca6g03391 401 Pfam SecY 184 382 IPR002208 GO:0015031|GO:0016020
Seca6g03391 401 ProSitePatterns Protein secY signature 2. 275 292 IPR030659 -
Seca6g03391 401 SUPERFAMILY Preprotein translocase SecY subunit 124 396 IPR023201 -
Seca6g03391 401 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 124 397 IPR002208 GO:0015031|GO:0016020
Seca6g03391 401 Gene3D SecY subunit domain 123 397 IPR023201 -
Seca6g03391 401 ProSitePatterns Protein secY signature 1. 183 202 IPR030659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03391 Seca-Chr6 101002744 101006704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03391 41 373 Chloroplast and Mitochondria Gene Families AT2G18710 80.896 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03391 K10956 - gmx:100810430 590.497