Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03385 ATGGGAATATTGTTCTGTGCCACCACCATTACTCTTTTGTTGCTCAATTTCCACATCCCAGAAACAATATCCCAACAAGACTATCTAGACAACAAGCAGCTAGATTGTTATGACCCTTCAAACTCTACATTTGGCAATGTTTGCAACAGCATCAGTTCTTGCCAATCTTACCTCACCTTCAAATCAAGCCCTCCTCAATACAACACTCCTGCTTCCATAGCTTACCTCTTGAACTCCACAGCCCCTATCATAGCCAAGGCCAACAACATCTCAGATGTGGACATAATCCCCACAGACACCATGATTACTGTCCCAGTTAATTGCACCTGTTCTGGTCACTACTACCAATACAATGCTTCATACACTTTGAAGACTGAAGATGAAAACCACTTCACTCTTGCCAACAACACCTATGAGGCCCTCACAACATGTCAAGCACTTGCATCTCAGAACATATATGGACTCACCAACCTCACTGCAGGGCTTAACCTTCATGTTCCACTCAGGTGTGCTTGTCCCACATCGAAGCAAATGGAAAATGGGTTCAAGTATCTTCTTACTTACTTGGTCTCTGAAGGAGAAAACATTGAATTGATTGCTGAGCTTTTTGGGGTTGACACACAGAGTGTTTTGGATGCAAACAAGCTTTCTAATGAGTCTCTTATCTACTACTTCACACCACTGATGGTGCCTCTAAGACATGAGCCACCTAAAAAGATAAAAAGGATGGTGTCACCATCACCATCACCCCCACCTCCTAAAGCAAATCCAAGTGGGGATGGAAATTCAAGCTCTTCTAAGAAATGGGTTGTTGTTGGAATCAGTGTTGGAGTTGCATTGCCGCTTCTTGTCACACTTCTTGTGCTGTTCTTATACTTTTGTTGCCACCAAAAGGCCAAGCCTTTGTTGTCTTCTGCACCCACCACAGAGAAGGTCTCAGTCTCAGTCTCAGATACCAACACAACTAACCAATTCCGCTGTCTATCTTCTGAAGGGCTTCGCTATGCTATTGAGTCCTTAACAGTTTACAACTTTGAGGAGCTGCAAAAAGCAACGAGCTTTTTCAGTGAAGCTAACAGAATTAAGGGTTCTGTTTACCGAGCATCCTTGAAGGGTGATGATGCTGCTGTTAAGATTCTCAAAGGTGATGTCTCTGGGGAGATCAACATTCTGAGGAGAATCAACCACACCAACATAATAAGGCTCTCTGGGTTGTGTGTACACAAAGGAAGCACTTATCTTGTCTATGAGTTTGCTGAAAATGGTTCTCTTGATGATTGGATTCATTCTAATAAGTGCCTAAATTCTATGACTCTGACTTGGAAGCAGAGAGTTCAGATTGCTCATGATGTAGCTGATGCTCTGAATTACCTTCACAACTATACTAACCCCCCACATGTCCACAAGGATTTGAAAAGTGGCAATGTGCTTTTGGATGGAAGTTTTAGGGGTAAAGTTTCTAACTTTGGGTTGGCTAGAGTAGTGGGTGATGATTTTGGTGAAGTGGGGTTTCATTTGACAAGGCATGTTGTGGGTACTCATGGTTATATGCCACCTGAGTATATTGAGAACGGTGTGATTAGCCCAAAGATGGATGTTTTTGCTTTTGGGGTTGTGATTTTGGAGCTTTTATCAGGAAGAGAAGCCATTGTTGGGGACAAGAATGGATCAGGGGAGCAAGTCTTATCACTATCAGAAAGTGTGAGTCAAGTACTTGAAGGCCAAAATGTGAGGGAGAAACTTCATGGTTTCATGGATCCAACTTTGAAGGGTGAATACCCATTGGATCTGGCATATTCCTTGGCAGAGATTGCCAAAAGTTGTGTTGCTCATGACCTTAATTTGCGTCCAAACATTTCTGAAGTTTTCATGACACTGTCTAAGATTCAATCTTCTTCACTAGATTGGGATCCATCTGATGAGCTGGAATTGTCCATAAACACCAGATTTGTTGACTAA 1959 0.4247 MGILFCATTITLLLLNFHIPETISQQDYLDNKQLDCYDPSNSTFGNVCNSISSCQSYLTFKSSPPQYNTPASIAYLLNSTAPIIAKANNISDVDIIPTDTMITVPVNCTCSGHYYQYNASYTLKTEDENHFTLANNTYEALTTCQALASQNIYGLTNLTAGLNLHVPLRCACPTSKQMENGFKYLLTYLVSEGENIELIAELFGVDTQSVLDANKLSNESLIYYFTPLMVPLRHEPPKKIKRMVSPSPSPPPPKANPSGDGNSSSSKKWVVVGISVGVALPLLVTLLVLFLYFCCHQKAKPLLSSAPTTEKVSVSVSDTNTTNQFRCLSSEGLRYAIESLTVYNFEELQKATSFFSEANRIKGSVYRASLKGDDAAVKILKGDVSGEINILRRINHTNIIRLSGLCVHKGSTYLVYEFAENGSLDDWIHSNKCLNSMTLTWKQRVQIAHDVADALNYLHNYTNPPHVHKDLKSGNVLLDGSFRGKVSNFGLARVVGDDFGEVGFHLTRHVVGTHGYMPPEYIENGVISPKMDVFAFGVVILELLSGREAIVGDKNGSGEQVLSLSESVSQVLEGQNVREKLHGFMDPTLKGEYPLDLAYSLAEIAKSCVAHDLNLRPNISEVFMTLSKIQSSSLDWDPSDELELSINTRFVD. 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03385 652 SUPERFAMILY Protein kinase-like (PK-like) 334 623 IPR011009 -
Seca6g03385 652 Pfam Protein kinase domain 375 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03385 652 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Seca6g03385 652 Gene3D LysM domain 186 241 IPR036779 -
Seca6g03385 652 Gene3D Transferase(Phosphotransferase) domain 1 419 643 - -
Seca6g03385 652 Pfam Mid2 like cell wall stress sensor 264 304 IPR007567 -
Seca6g03385 652 Pfam LysM domain 188 226 IPR018392 -
Seca6g03385 652 MobiDBLite consensus disorder prediction 243 257 - -
Seca6g03385 652 ProSiteProfiles Protein kinase domain profile. 351 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03385 652 ProSiteProfiles LysM domain profile. 186 230 IPR018392 -
Seca6g03385 652 MobiDBLite consensus disorder prediction 239 264 - -
Seca6g03385 652 SMART serkin_6 355 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03385 652 FunFam PTI1-like tyrosine-protein kinase 3 419 640 - -
Seca6g03385 652 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03385 Seca-Chr6 100938921 100940879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03385 7 642 Receptor kinase-like Gene Family AT2G33580 51.198 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca6g03385 Pkinase 6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03385 - - tpra:123901277 902.894