Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03384 ATGACTCTGTTCACAAAACAACACTTAATTTTGGTGATGTTCCTAATAACTGCATCTAAAGCCAGGCCAAATGACTGCCCAACAAGCTGTGGCTCTCTCAAAATTCCATACCCATTTGGGATGAGTGAGGGTTGCTACTTGGACCACTCTTTCTTCATCAATTGCACCCATAACCATAATTCCTCCACTACCAATCCCATCCCACACCTTCCACGCCCAAACACCAACATGATTGTCTTCAACATATCACTAAATGACGGGGAACTCCTCGTTTCAAGTCCCGTAGCACGTTATTGTTTCAGCAAGAGAGGCACTATTCAAAGTTCTCTCCAAGAGAGACAAAAAATGTTCAACTTGACTCATTTTTCGGTGTCACCCACTCGGAACAAATTCACTGCTGTTGGATGCAACACAATTGGAGTATATAAGGGTGACGCTTCTCTTTCTCTAACAAAAAACGTTACCGAAGGAACAGGAGGGGCATGTCTTTCCTTATGCAACAAAATTGATGAGGTCAGTAATGGGTCTTGTTCTGATACTGGCTGTTGTCAAATTCCTATATACAAACAATTGTCCTATAATGTCGTGATAGCCACAACGAGTATGGAATTCGATTCAGGGGTACATGAGAACTTTTTCAATCCATGTAGCTATGCATTCATAGGTGAAGAAGGGGCCTACAACTTCTCGTCGACGGATCTAATTAGGAATAATTTGGAGAACAAGAGTGTACCAATGGTGCTTGATTGGGCAGTGGGAAATGAAACGTGCCAAGAGGCCAAACAAAATCAGACGACCTACGCGTGCAAAGCAGACAAGAGTGAATGTCTCAATTCAACCAACAGAATGGGATATCGTTGCAAATGCCTCTCCGGTTTTGAGGGAAACCCGTATCTCTACGATGGATGTCAAGACATCAAAGAATGCAACATGGAACCTAACCCCTGCAGCGGAATATGCCACGAACTTGAAGGCAACTATACTTGTTCATGTCCGGAGGGATACGAAGGAGATGGGTATAGAAGTGGCATAGGTTGCCATCCCAAAGGCAAATCCAGGACGAAACTTGCACATATAATTGCAGTGGGTAAGTGTATATCATATTTCTTAATTTTCTTGGGTATATTGGCACTGCTTGTGGGAAGCTTGTACTTGTATTCCAAACTGAGAAAAGCAAAGCTCAACAAAATCAGACAAAAGTATTTTCAACAAAATGGCGGCACATTGTTAAAACAACGAATTGCTGCATATCAAGGGTCCACAGAAAGAGCTACAATCTTCACTGCTCAAGAGATGAAGAAAGCCACCAACAACTATGATGAGGATAGAATCATAGGTAAAGGGGGCCATGGAACAGTGTACAAAGGTGTTTTATCAGATAACAGAGTTGTTGCCATCAAGAAGACCAAGATTTCAAGTCAAATTGAGATTGAGCAATTCATCAACGAGGTACTTGTGCTTTCCCAAACCAACCACAGGAATATTGTGAAGCTCCTAGGTTGTTGTTTGGAGATAGAGGTTCCTCTTCTTGTTTATGAATTCATCACTAATGGGACACTTTCAGAACACATTCATGTTGAAGGTCAAGCCTCTCAACTTTCATGGCAAGTACGTTTGAGAGTTGCAGCTGAGACTGCAGAAGCCCTTGCATACTTGCACTCTGCTGCCTCTACACCAATCATACATAGAGATGTCAAAACTGAAAACATACTACTAGATGATAATCTCACAGCCAAAGTTTCTGATTTTGGAGCTTCAAAGCTTATTCCTATTAATAAAACACAATTAACAACCTTAGTGCAGGGTACATTGGGTTATCTTGATCCACAATACTTCCAATCAAGTCAGTTAACAGAGAAGAGTGATGTCTACAGTTTTGGGGTTGTCTTGGCAGAGCTATTAACAAGCATGAAGGCACTTTCATTCATGAGGCCTGAGAGTGATAGAAATCTATCTAACTACTTTGTTTCTTTGCTGAGTGAGGATCGCTTGCCTCAAATCCTTGACAACAACATAGTCAATGATGCAAATTTTGAGCAAATAATGGAAGTGGCTTATCTTGTGAAAAGGTGTCTTATGCTTAAGGGAGAGGAAAGACCAACTATGAAAGAAGTTGCAATGGAATTGGAGAGAATAAGGACTGTGGAAAAACTTTCATCAACTGCAACCAATTTGTCCTTGGAAGAAACTGAGTACTCCTTCAGAGTACCAAGGTCCCCCTACATTACTGATGGTAGACGGGGCAGTGGTGGTGGCAGCATAATTACTGGGGTTGATAGTATTCAAACCCAGGTTTTGGAGCCACTAGATGAGGGACCATAA 2322 0.4169 MTLFTKQHLILVMFLITASKARPNDCPTSCGSLKIPYPFGMSEGCYLDHSFFINCTHNHNSSTTNPIPHLPRPNTNMIVFNISLNDGELLVSSPVARYCFSKRGTIQSSLQERQKMFNLTHFSVSPTRNKFTAVGCNTIGVYKGDASLSLTKNVTEGTGGACLSLCNKIDEVSNGSCSDTGCCQIPIYKQLSYNVVIATTSMEFDSGVHENFFNPCSYAFIGEEGAYNFSSTDLIRNNLENKSVPMVLDWAVGNETCQEAKQNQTTYACKADKSECLNSTNRMGYRCKCLSGFEGNPYLYDGCQDIKECNMEPNPCSGICHELEGNYTCSCPEGYEGDGYRSGIGCHPKGKSRTKLAHIIAVGKCISYFLIFLGILALLVGSLYLYSKLRKAKLNKIRQKYFQQNGGTLLKQRIAAYQGSTERATIFTAQEMKKATNNYDEDRIIGKGGHGTVYKGVLSDNRVVAIKKTKISSQIEIEQFINEVLVLSQTNHRNIVKLLGCCLEIEVPLLVYEFITNGTLSEHIHVEGQASQLSWQVRLRVAAETAEALAYLHSAASTPIIHRDVKTENILLDDNLTAKVSDFGASKLIPINKTQLTTLVQGTLGYLDPQYFQSSQLTEKSDVYSFGVVLAELLTSMKALSFMRPESDRNLSNYFVSLLSEDRLPQILDNNIVNDANFEQIMEVAYLVKRCLMLKGEERPTMKEVAMELERIRTVEKLSSTATNLSLEETEYSFRVPRSPYITDGRRGSGGGSIITGVDSIQTQVLEPLDEGP. 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03384 773 Pfam Wall-associated receptor kinase galacturonan-binding 26 91 IPR025287 GO:0030247
Seca6g03384 773 Gene3D Transferase(Phosphotransferase) domain 1 515 732 - -
Seca6g03384 773 SUPERFAMILY EGF/Laminin 303 339 - -
Seca6g03384 773 CDD EGF_CA 305 338 - -
Seca6g03384 773 SMART egf_5 256 304 IPR000742 -
Seca6g03384 773 SMART egf_5 308 347 IPR000742 -
Seca6g03384 773 CDD STKc_IRAK 445 712 - -
Seca6g03384 773 ProSiteProfiles Protein kinase domain profile. 439 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03384 773 SMART egfca_6 305 347 IPR001881 GO:0005509
Seca6g03384 773 ProSitePatterns Protein kinases ATP-binding region signature. 445 468 IPR017441 GO:0005524
Seca6g03384 773 Gene3D Phosphorylase Kinase; domain 1 403 514 - -
Seca6g03384 773 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 717 IPR045274 GO:0007166
Seca6g03384 773 FunFam Wall-associated receptor kinase 2 515 732 - -
Seca6g03384 773 SUPERFAMILY Protein kinase-like (PK-like) 423 715 IPR011009 -
Seca6g03384 773 ProSiteProfiles EGF-like domain profile. 305 338 IPR000742 -
Seca6g03384 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 560 572 IPR008271 GO:0004672|GO:0006468
Seca6g03384 773 FunFam Wall-associated receptor kinase 2 409 514 - -
Seca6g03384 773 SMART serkin_6 439 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03384 773 Gene3D Laminin 254 343 - -
Seca6g03384 773 FunFam Wall-associated receptor kinase 2 255 307 - -
Seca6g03384 773 Pfam Protein kinase domain 439 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03384 Seca-Chr6 100915149 100919653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03384 9 713 Receptor kinase-like Gene Family AT1G21230 45.188 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca6g03384 Pkinase 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03384 - - vun:114190859 803.512