Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03383 ATGTATTTAACAGTAACACCTTTTCTTTGTTTGAAACCACGAAAACAGAACAGAACAAAACAAAGGTTGTTAAGAGGTATGAACAGAAAGTCTCCGTCTCTGGCGTTTCTTGCTACAACCATTTCGACCAAGTTTCACGTTCCACCTTCTCAATGGCGATTCTTCTGTTCTCCACCCTCTCCTCTCTCCACCAACAAGCTCTTTGTTGGAGGGCTGTCATGGTCAGTGGACGAGAAGTCTCTCACAGACGCTTTCTCTTCGTTCGGAGACGTCACTGAAGTGAGGATAGTGTATGATAAAGACAGTGGTAGGTCTAGAGGCTTTGGGTTTGTCATCTTTTCAAATGAAGATGATGCCAAATGTGCAAAGGATGCAATGGATGGAAAGGCACTGTTAGGTAGACCATTGAGGATCAATTTTGCTCTTGAGAAGCCCCGTGGTGTACCTGTTGTAGTTCCTCGATTTTCAGATATTGGACATTTAAACAAGCACTAA 495 0.4323 MYLTVTPFLCLKPRKQNRTKQRLLRGMNRKSPSLAFLATTISTKFHVPPSQWRFFCSPPSPLSTNKLFVGGLSWSVDEKSLTDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDDAKCAKDAMDGKALLGRPLRINFALEKPRGVPVVVPRFSDIGHLNKH. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03383 164 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 61 146 - -
Seca6g03383 164 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 137 IPR000504 GO:0003723
Seca6g03383 164 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Seca6g03383 164 CDD RRM2_NsCP33_like 66 141 - -
Seca6g03383 164 Gene3D - 14 147 IPR012677 -
Seca6g03383 164 SMART rrm1_1 66 139 IPR000504 GO:0003723
Seca6g03383 164 SUPERFAMILY RNA-binding domain, RBD 46 147 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03383 Seca-Chr6 100907353 100916540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03383 62 145 C2H2 Transcription Factor Family AT2G19380 36.047 5.15e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03383 - - lang:109361234 232.646