Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03371 ATGGAAAACCCCAGATGCGGGTTTCTCCTTGCTCTGCCATCGTTCCTCTTGTTACTGTCTTCATTCACTTTCAGTGCAGAATCCAAGTGCACACGGGGTTGTCCACTAGCTCTAGCCTCCTTCTACATATGGAAAGGTTCCGACCTCACATATATTTCAGATATTATGCCATCTTCGATTCTTACAAAGCCTGAAGACATAGTCAACTACAACAAAGCCACGATACCCAACAAAGACAGTGTTCAATCAGACCAAAGGGCCAACATTCCATTCCCATGTGACTGCATCAATGGCGACTTCCTCGGTCACACGTTTAGTTACGATGTTCAGACAGGGGACACGTATGAAAAAGTTGCTGGGAACTACGCTAACCTCACTAATGTTCAATGGTTGATGAGGTTCAACAGCTACGGTCCCAATAACATTCCCGACACTGGATTCCTTAATGTTACCGTTAACTGTTCTTGTGGGAACAGTGATGTTGCGGATTATGGATTGTTCATCACTTACCCTCTTAGGCCTGGGGAGACTTTGGGGACTGTGGCAAATGAAACGAACCTTGATTCAGCCTTGCTGCAGAGGTACAATCCCGGTGTCAATTTCAACCAAGGGAGTGGCCTGGTTTTTATTCCGGGCAAAGGTGCTTTTTTTATGTATATAATAACTATATATTTAAATGCAGGTCTTGCTGGTGGAGCTATTGCTGGAATAGCTGTTGGAGTAGTGGCTTGTCTTCTGTTATTGGCAGTTTGTATCTATTTTGGATATTTCCGGAAGAAGAAGATACAGAAGGAGGAATTTCTTCCACAAGATTCCAATGCTTTTTTAGCTCAAGATGGGAAGGGTATGACAGATGAAACTTCTCGTAGTGCTGCAAATGAAACGCCGAGGCCTGGTGGTCCTGCTGTCATCACAGGCATAACAGTGGACAAATCGGTGGAATTCTCATATGAAGAGCTAGCAACTGCCACAGATAACTTTAGTATGGCTAATAAAATTGGTCAAGGTGGTTTTGGCTCTGTCTACTATGCGGAGTTGAGGGGAGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAAAGAATTTCTTGCTGAATTGAAAGTCCTGACACGTGTTCATCATCTTAACCTGGTGCGGTTGATTGGATATAGTATCGAGGGCTCTCTTTTCCTTGTCTATGAATACATTGAGAATGGAAACTTAAGCCAACATTTGCGTGGTTCAGGTAGAGATCCACTGTCATGGGCTGCAAGGGTGCAGATTGCTTTGGATTCCGCCAGAGGTCTTGAATATATTCATGAGCATACGGTGCCTGTATATATTCATCGTGACATAAAGTCAGCAAACATATTAATAGACAAAAACTTCCGGGGGAAGGTTGCTGATTTTGGATTGACCAAACTGACAGAAGTTGGAAGCTCATCGCTTCCCACTGGTCGTCTTGTCGGAACATTTGGATACATGCCACCAGAGTATGCTCAATATGGAGATGTTTCTCCCAAAGTAGATGTGTATGCTTTTGGAGTTGTTCTTTATGAACTTATTTCAGCTAAGGAAGCAATTGTCAAGACAAGTGAATCTATTGCTGACTCAAAGGGCCTCGTAGCTTTGTTTGAAGGAGTTCTTAGTCAGCCTGATCCTACAGAAGATCTTTGCAAACTAGTGGATCCAAGGCTTGGGGATAACTACCCTATTGATTCAGTTCGCAAGATGGCTCAACTAGCCAAAGCATGTACACAGGACAATCCCCAACTGCGTCCAAGTATGAGATCCATTGTTGTTGCTCTTATGACACTTTCTTCAACTACAGATGATTGGGATGTTGGCTCCTTCTATGAAAATCAAAATCTTGTGAATCTTATGTCAGGAAGATAG 1881 0.4317 MENPRCGFLLALPSFLLLLSSFTFSAESKCTRGCPLALASFYIWKGSDLTYISDIMPSSILTKPEDIVNYNKATIPNKDSVQSDQRANIPFPCDCINGDFLGHTFSYDVQTGDTYEKVAGNYANLTNVQWLMRFNSYGPNNIPDTGFLNVTVNCSCGNSDVADYGLFITYPLRPGETLGTVANETNLDSALLQRYNPGVNFNQGSGLVFIPGKGAFFMYIITIYLNAGLAGGAIAGIAVGVVACLLLLAVCIYFGYFRKKKIQKEEFLPQDSNAFLAQDGKGMTDETSRSAANETPRPGGPAVITGITVDKSVEFSYEELATATDNFSMANKIGQGGFGSVYYAELRGEKAAIKKMDMQASKEFLAELKVLTRVHHLNLVRLIGYSIEGSLFLVYEYIENGNLSQHLRGSGRDPLSWAARVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIVKTSESIADSKGLVALFEGVLSQPDPTEDLCKLVDPRLGDNYPIDSVRKMAQLAKACTQDNPQLRPSMRSIVVALMTLSSTTDDWDVGSFYENQNLVNLMSGR. 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03371 626 FunFam LysM receptor kinase 2 306 397 - -
Seca6g03371 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Seca6g03371 626 MobiDBLite consensus disorder prediction 280 299 - -
Seca6g03371 626 SMART serkin_6 327 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03371 626 Pfam Protein tyrosine and serine/threonine kinase 329 597 IPR001245 GO:0004672|GO:0006468
Seca6g03371 626 Pfam LysM domain 107 142 IPR018392 -
Seca6g03371 626 CDD STKc_IRAK 333 595 - -
Seca6g03371 626 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Seca6g03371 626 FunFam PTI1-like tyrosine-protein kinase 3 398 612 - -
Seca6g03371 626 Gene3D Phosphorylase Kinase; domain 1 304 397 - -
Seca6g03371 626 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 15 612 IPR044812 GO:0019199|GO:0045087
Seca6g03371 626 Gene3D Transferase(Phosphotransferase) domain 1 398 617 - -
Seca6g03371 626 ProSiteProfiles Protein kinase domain profile. 327 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03371 626 SUPERFAMILY Protein kinase-like (PK-like) 308 598 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03371 Seca-Chr6 100781121 100788948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03371 10 626 Receptor kinase-like Gene Family AT3G21630 58.730 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca6g03371 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03371 K13429 - gmx:100777781 973.77