Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03369 ATGTCTTCCTCATTCTGTTTGAAGCTTTTCTCAATCCTTTTGTTCTGCATACATATCTTCCCTATCTTTTCACATACTGAAACAACATCAATGTTCAGCCACTACAACTGCACAAGCACACATACATTTAGTCCCAACAGCACTTACCAATCAAACCTAAACACACTCTTATCTACACTTTCATCCAAAGCTTCTAGCAGCACTAACCAAGTCTTCTACAACACCACAATTGGTGAAACAAACACTTGGGACACTATCTATGGCCTCTTCATGTGCATTGGATACATAGAGAACTGTGAAGAATGTGTGAAGAACTCCATTCAGACACTTACCTCAATGTGTGCCTTCAATAAAGAAGCTATAATTTGGTCAGATGAATGCTTGGTGCATTATTCCAACCAATCTTTCTTCAACACTATGGAGGAATGGCCATTATATTGTGTGCAAAACACAGAGGATTATCATGGCCTATTGGATAGCTTCAACAAAGTGTTAAGTTCCTTGATGGAGGATCTTCTAACTCAAGCTAGTGAAGCTCCAATTGGTTCTAATAAATTTTCTGTCAAGAAAGCAATTTTCTCTGAGGACAATTTTTTGTTTGGCCTTGCTCAATGCACTCCAAATCTCTCAAAGGACAATTGCACACAGTGTCTCAAGGATGCTATGGCTTATCTTCAGAACTCATGTGCTAGAGGAAAGACAAGAGGAAGAGTTCTATTTCCAAGTTGTATTGTTAGATATGATCCTTATCCATTTTCTCCATTACTTAGAGGAGAGAAAAAGAATCATGGAGCACTAGCATCTTTCTTAATTCTCCATGCACTTGTTCCAGTTATTGTTTTCTCTTTTGGGTGTTATCTGCTACATAGGATAGCAAGGAAGAATCACAAGCACCAGAAAGAAAATTTTGGGGAAGAGATTACAACAGAAATGAACTCTTTGCAATTTGATTTGAGTACTATTCAATTAGCAACAAACAAGTTCTCTGTTGATAACAAGATAGGGGAGGGTGGTTTTGGAGCAGTTTACAAGGGTGTGTTTCCTAATGGACATGAAATAGCTGTAAAGAGGCTCACAAGAAATTCAAGTCAAGGAGCTGTAGAATTCAAGAATGAAGTTTTGTTGATAGCCAAGCTTCAACACAGAAATCTTGTGAGATTGTTAGGATTTTGCATGGAAAGGAATGAGAAGATACTCATTTATGAATTTATGCACAACAAAAGCCTTGATTACTACCTATTCAGCCCTGTAAACCATAGAAAATTAACTTGGCATGAACGTTACAAGATTATAATAGGGATTTCCCGAGGTATTCTTTATCTCCATGAGGATTCTCATCTCAAAGTCATACATTGTGATCTTAAACCCAGCAACATTTTGTTAGATGACAAAATGAATGCAAAGATATCAGATTTTGGCTTGGCAAGGATTGTTTCCATGGATCAAATGCAAGGAAATACTAGTATAATTGCTGGGACATATGGCTACATGTCTCCTGAGTATGCAATGCTAGGCCAATTTTCTGTGAAATCTGATGTATTCAGCTTTGGAGTCATAATTCTTGAGATTGTTAGTGGAAAAAGAAATGTTGATTTTAATGGGGAAGATTCAATTGATGACCTATTGAGCTATGCATGGAAGAAGTGGAGGAATAATAAGGAATTAGAATTGTTGGATCCTACATTAGCACACTCATTTTCAGAAAAAGAAATTAAGAGATGCATACAAATTGGTCTACTATGTGTGCAGGAAAACCCAGATCAAAGGCCTACTATGGCAACAATTGCTTTGTATTTTAACTGTGATTCAATGGTTCTGCCATTACCTAAAGAGCCAGCATTTTTCATGCGTGGAAGAACAGAATCAAGGATGGCTAAGAAGGAATCAGAGTTAGGTCGACCTAAAAGTCATTAA 1914 0.372 MSSSFCLKLFSILLFCIHIFPIFSHTETTSMFSHYNCTSTHTFSPNSTYQSNLNTLLSTLSSKASSSTNQVFYNTTIGETNTWDTIYGLFMCIGYIENCEECVKNSIQTLTSMCAFNKEAIIWSDECLVHYSNQSFFNTMEEWPLYCVQNTEDYHGLLDSFNKVLSSLMEDLLTQASEAPIGSNKFSVKKAIFSEDNFLFGLAQCTPNLSKDNCTQCLKDAMAYLQNSCARGKTRGRVLFPSCIVRYDPYPFSPLLRGEKKNHGALASFLILHALVPVIVFSFGCYLLHRIARKNHKHQKENFGEEITTEMNSLQFDLSTIQLATNKFSVDNKIGEGGFGAVYKGVFPNGHEIAVKRLTRNSSQGAVEFKNEVLLIAKLQHRNLVRLLGFCMERNEKILIYEFMHNKSLDYYLFSPVNHRKLTWHERYKIIIGISRGILYLHEDSHLKVIHCDLKPSNILLDDKMNAKISDFGLARIVSMDQMQGNTSIIAGTYGYMSPEYAMLGQFSVKSDVFSFGVIILEIVSGKRNVDFNGEDSIDDLLSYAWKKWRNNKELELLDPTLAHSFSEKEIKRCIQIGLLCVQENPDQRPTMATIALYFNCDSMVLPLPKEPAFFMRGRTESRMAKKESELGRPKSH. 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03369 637 Gene3D - 29 136 IPR038408 -
Seca6g03369 637 Gene3D - 145 252 IPR038408 -
Seca6g03369 637 Pfam Salt stress response/antifungal 152 248 IPR002902 -
Seca6g03369 637 Pfam Salt stress response/antifungal 37 134 IPR002902 -
Seca6g03369 637 SMART serkin_6 328 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03369 637 Gene3D Phosphorylase Kinase; domain 1 289 403 - -
Seca6g03369 637 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Seca6g03369 637 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 289 403 - -
Seca6g03369 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Seca6g03369 637 SUPERFAMILY Protein kinase-like (PK-like) 313 617 IPR011009 -
Seca6g03369 637 ProSiteProfiles Gnk2-homologous domain profile. 31 136 IPR002902 -
Seca6g03369 637 FunFam cysteine-rich receptor-like protein kinase 10 404 606 - -
Seca6g03369 637 CDD STKc_IRAK 334 596 - -
Seca6g03369 637 Gene3D Transferase(Phosphotransferase) domain 1 404 603 - -
Seca6g03369 637 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 624 - -
Seca6g03369 637 Pfam Protein tyrosine and serine/threonine kinase 330 596 IPR001245 GO:0004672|GO:0006468
Seca6g03369 637 ProSiteProfiles Protein kinase domain profile. 328 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03369 637 ProSiteProfiles Gnk2-homologous domain profile. 142 252 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03369 Seca-Chr6 100767232 100770639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03369 4 623 Receptor kinase-like Gene Family AT4G05200 43.760 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g03369 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03369 - - mtr:11443024 876.7