Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03365 ATGGCTAACCAGCAAATCATCAATTCTCCTTCTTTTGCGTTGCCATCAGTGCAACACTCTTCTTCTTCTTCTCTGAAAAGATATGATGTTTTTCTCAGCTTTCGAGGTGAGGATATTCGCAAGAGCTTCGTAAGTCATTTTTATGAAGCTCTGATCCAAAAGAAAGTTGAAACCTATATAGACTACAGGCTTGAAAAGGGAGATGAGATTTCGCAAGCACTCATCAAAGCCATTGAAGAGTCAGTTGTATCTGTTGTCATCTTCTCAGAAAACTATGCAACCTCCAAGTGGTGCTTGGATGAAATCAGTAAAATCCTAGAATGCAAGAAGGATAAAGGACAGATTGTGATACCTGTGTTCTATAAAATAGATCCATCACATATAAGGAAGCAGACAGGGAGCTACGAGGAAGCGTTTGCAAAACATGAGGGAGATCTAAACATCTCAAAAGAAAGGTTACAAAAATGGAGATCTGCTCTCACAGAAGCAGCCAATTTGGCTGGTTGGGACTCTGAAACAAATAATAGGAATGAATCTGAATTCATTAAGGAGATTGTTAAAGACATTTTGCAAAAGCTAAATGTTAGGTACCCAATTGAATTGAAGAGACTGGTTGGAATCGAGGAAAATTATGTAGAGGTTGAATCATTGTTGGAAATTAGCTCAAGGCAAGTTCGAATGATTGGAATATGGGGCATGGGTGGCATAGGTAAAACTACCTTGGCAATTGCTTTACATGCCAGATTGTCTTCTCAATTTGAAGCTCATTGCTTTCTCAAAAATGTAAGGGAACAATATTCAGAAAAAAATGGTCAAATTAACTTACGGGATAAACTATTTTCTAAGCTGTTAGAGGAAGAAAAGCTTCATCTTGATATGCCTGAACTAGAATCTTCTTTTGTGAGGAGCAGGCTGAGTTGTAAAAAAGTTTTTATTGTTTTGGATGATGTGGCAACCTTGGAACAATTAAAAGGTCTAATTGGTGATTACAAATGTTTGGGACCAGGAAGTAGAGTGATAGTGACAACTAGACATAAGGTTAAGGAATTGAATGACAATGACTCTCTTCAGCTTTTCTGTTTGAATGCCTTCAGTGAAAAGCATCCTAAAAATGGATTTGAAGAGCTATCAGAAAGTGTAATTGCCTATTGCAAAGGCAATCCTTTGGCTTTAAAAGTTTTGGGTGCACATCTTTATTCAAGAAGTGAAGAATCATGGAAAAGTGAATTGAGAAAGCTTCAGAAGATTCAAGATGATAAAATTCACTCTGTGTTAAAATTGAGTTTTGATGATTTAGATTGTACTGAGCAGGACATATTTCTAGACATTGCATGCTTCTTAAAAGGAGAATCCAAAGGAATAGAAGTCCTTATAGATAAGTCTCTTATAAATATATCAAATGATGGCAAAATAGAAATGCATGACTTGATACAAGAAATGGGCAGGAATATTGTTCATCAAGAATCTAGCAAAGAACCTGGAAGACGAAGTCGATTATGGGATCCTAAGGAGGTGTATGATGTATTGAAAGATAATAAGGGAACTGAAGCTATAGAAGGCATAATTTTAGATGTTTCTAAAATAGAGGATCTTCATTTGACCGCAAATTCCTTTGCAGAAATGACTAACATAAGATTTCTGAAATTCTACTCTCAAAAGTGGAGTGACAAATGCCATATATACCTTCCTAAAGGTCTTAAATCACTGTCAAACAAATTGAGGTACCTTCAATGGAATGGATACTATTTGGAGTCTTTGCCATCAACCTTTTGTCCTAAATTGCTTGTAAAACTTTCCATGCCTCACAGCAACCTTGGAAAGCTTTGGGACGGAGTTCAGGATCTTGTGAATTTAAAGGAAATTAATCTTGATTTCTCCAAACACCTGATTGAGCTTCCAGACTTATCTATGGCCACAAATCTTGATGCATTATCTCTTCGTCGATGTGAAAGTTTGCGTCAAGTTCATCCATCCATTTTGTCTCTCCATAAGCTTCAGTTTCTAGATTTAGAAGGCTGCACAGAGATTGAAAGCCTTCAAACTGATGTTCATTTGGACTCTCTTCGTTACCTCTCTCTCAAGAAATGCTCATCCCTGAAGGAATTTTCAGTCTCATCAAAAGAGCTTTTTGCATTGTTGTTGGAGGGTACAGCTATAAAAAAATTACCTTCATCAATTTGGCAGAGTGAAAATCTTAACCAAATTCATTTGCGAGGATGTGACAATCTTGACAATTTGGGGAATAAGTTAACTCATGATCCAGGAGTAGGATCTCTTTCATGTCTGATCCTTTCTGAATGCAAACAATTGAATGCATCGAATCTATGTTTGATCCTTGATGGTTTGCAGTCTTTAACCAAGTTGTACCTGGACCATTGTTACAACTTACGAGCACTCCCTGATAGCATTGGCTTGTTATCATCACTAGAGTACTTAAACCTATCAGGAAGTAATGTTGAGATCTTGTCTCCAAACATCAAGAACCTTTTGATGCTAAAAGAGCTTCGGTTAGACAATTGCATGGAACTTATGTCTTTGCCAAAGCTTCCACCATCCTTGAAAATGTTAGCTGCCTATAAATGCACACAACTAATTAATGCATCGAATATATGCCTTGATGGTCTGTGGTCATTAACATGGTTGGAGCTAGAAAATTGTTACAACTTGCAAGAACTCCCTGAAAACATTGGCTTGTTATCATCATTACAAATCTTAGACCTAAGAGGAACCAAGGTTGAGATCTTGTCTCCAAACATCAAGAACCTTTTGATGTTGGAAATGCTTAAGTTAGACAATTGCAAGAAACTTGTGTCTCTTCCGGAGCTTCCATCATCCTTGAGAATTTTAAGACTCTCTAATTGCACACAATTGAATGCATCAAATATATGCTTTGATGGCCTACAGTCTTTAACGTCACTGAATTTGAATAATTGTTGCAACTTAGGAGCACTCCCTGACAACATTGGCTTACTATCACCATTAGAGTACTTGAACCTATCAGGAAGCAATGTTGAGATCTTGCCTCCAAACATCAAGAACCTTTTGATGCTGAAAGAGCTTTGGTTAGATAATTGCATGAAGCTTGTGTCTTTACCAAAGCTTCCTCACTCCTTGCAAGTGTTAAGTGCCCTTAATTGCACATCTTTAGAGATAGACTTCAGTCAATTGCCAGTGATAGAACACAACATATCCTTTTCACTTAAACATGGAATTAAAGAATGTTGTCAATATGTTTTTCTCCCCGGATCCCAAGTTCCAAATAGTTTTAGCTTTTGTGCTAAAGAGGCTTCAATAACTATTCCACATCTTCCACAATCTGACTTATGTGGTTTTATATTTTGCCTCATTCTTTCTCAGTCACTGCCAAATGGCAAATATAAATCTGTTGAATGTTCTATCAACATATATTCCAAAAGCATTGGTAACAAAAAGATCATTTTGGATTATCAAAATCTGATTTCAGATCACATGCTTTTTTGGTATATTGACATCAATGAAGGTGGAAACAATTCTCTTCATAGGAAAATACAAAATAGTGAAGTGTGTGATCCTTATAGCATGTCATTTGAATTCTCTCTTGAATATAAGGGTGGAGAATGGTCAAGGAAAGGGATGATAAAGAGGTGTGGGGTTCACCCTGCATATGCCACTGAACATGGTTGTTCCTCTAAACAACATGATTTGAAGTTGGAGTTTAAGGGTAGTTCTAAAGATTTTGTTGAGATAGAACCCAACAGTTCTAAAGACATCAGTGAGCTAAAACCCAGAGCATTTGGATTTGGAATTGAAGGATCTAATCATCACAATGAAGATGATGAGACTAAGAAATTGCAGGAAGGAACACACCAAATAATTACAACAGGAATGCAGAATGAAAATTCTCTGCATCACAATTTCATAGGTATGAAACTTCACACACTCCATCTTTATAGACTCCTTATTTTTTTTCTTCTTTTTGCTATTGCCTTTCATTTGGTGTAA 3981 0.3667 MANQQIINSPSFALPSVQHSSSSSLKRYDVFLSFRGEDIRKSFVSHFYEALIQKKVETYIDYRLEKGDEISQALIKAIEESVVSVVIFSENYATSKWCLDEISKILECKKDKGQIVIPVFYKIDPSHIRKQTGSYEEAFAKHEGDLNISKERLQKWRSALTEAANLAGWDSETNNRNESEFIKEIVKDILQKLNVRYPIELKRLVGIEENYVEVESLLEISSRQVRMIGIWGMGGIGKTTLAIALHARLSSQFEAHCFLKNVREQYSEKNGQINLRDKLFSKLLEEEKLHLDMPELESSFVRSRLSCKKVFIVLDDVATLEQLKGLIGDYKCLGPGSRVIVTTRHKVKELNDNDSLQLFCLNAFSEKHPKNGFEELSESVIAYCKGNPLALKVLGAHLYSRSEESWKSELRKLQKIQDDKIHSVLKLSFDDLDCTEQDIFLDIACFLKGESKGIEVLIDKSLINISNDGKIEMHDLIQEMGRNIVHQESSKEPGRRSRLWDPKEVYDVLKDNKGTEAIEGIILDVSKIEDLHLTANSFAEMTNIRFLKFYSQKWSDKCHIYLPKGLKSLSNKLRYLQWNGYYLESLPSTFCPKLLVKLSMPHSNLGKLWDGVQDLVNLKEINLDFSKHLIELPDLSMATNLDALSLRRCESLRQVHPSILSLHKLQFLDLEGCTEIESLQTDVHLDSLRYLSLKKCSSLKEFSVSSKELFALLLEGTAIKKLPSSIWQSENLNQIHLRGCDNLDNLGNKLTHDPGVGSLSCLILSECKQLNASNLCLILDGLQSLTKLYLDHCYNLRALPDSIGLLSSLEYLNLSGSNVEILSPNIKNLLMLKELRLDNCMELMSLPKLPPSLKMLAAYKCTQLINASNICLDGLWSLTWLELENCYNLQELPENIGLLSSLQILDLRGTKVEILSPNIKNLLMLEMLKLDNCKKLVSLPELPSSLRILRLSNCTQLNASNICFDGLQSLTSLNLNNCCNLGALPDNIGLLSPLEYLNLSGSNVEILPPNIKNLLMLKELWLDNCMKLVSLPKLPHSLQVLSALNCTSLEIDFSQLPVIEHNISFSLKHGIKECCQYVFLPGSQVPNSFSFCAKEASITIPHLPQSDLCGFIFCLILSQSLPNGKYKSVECSINIYSKSIGNKKIILDYQNLISDHMLFWYIDINEGGNNSLHRKIQNSEVCDPYSMSFEFSLEYKGGEWSRKGMIKRCGVHPAYATEHGCSSKQHDLKLEFKGSSKDFVEIEPNSSKDISELKPRAFGFGIEGSNHHNEDDETKKLQEGTHQIITTGMQNENSLHHNFIGMKLHTLHLYRLLIFFLLFAIAFHLV. 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03365 1326 Pfam Leucine Rich Repeat 595 613 IPR011713 -
Seca6g03365 1326 ProSiteProfiles TIR domain profile. 26 193 IPR000157 GO:0007165
Seca6g03365 1326 FunFam Disease resistance protein (TIR-NBS-LRR class) 24 195 - -
Seca6g03365 1326 FunFam Disease resistance protein (TIR-NBS-LRR class) 351 433 - -
Seca6g03365 1326 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 169 IPR035897 -
Seca6g03365 1326 Gene3D Ribonuclease Inhibitor 488 708 IPR032675 -
Seca6g03365 1326 Gene3D Ribonuclease Inhibitor 709 894 IPR032675 -
Seca6g03365 1326 Gene3D Ribonuclease Inhibitor 895 1069 IPR032675 -
Seca6g03365 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 443 IPR027417 -
Seca6g03365 1326 Pfam TIR domain 28 199 IPR000157 GO:0007165
Seca6g03365 1326 SUPERFAMILY L domain-like 759 1049 - -
Seca6g03365 1326 SUPERFAMILY L domain-like 473 856 - -
Seca6g03365 1326 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 703 IPR044974 GO:0006952
Seca6g03365 1326 Gene3D - 191 351 IPR027417 -
Seca6g03365 1326 FunFam Disease resistance protein RPS4 515 707 - -
Seca6g03365 1326 Gene3D - 352 433 IPR042197 -
Seca6g03365 1326 PRINTS Disease resistance protein signature 227 242 - -
Seca6g03365 1326 PRINTS Disease resistance protein signature 384 398 - -
Seca6g03365 1326 PRINTS Disease resistance protein signature 304 318 - -
Seca6g03365 1326 PRINTS Disease resistance protein signature 683 699 - -
Seca6g03365 1326 SMART till_3 27 166 IPR000157 GO:0007165
Seca6g03365 1326 Pfam NB-ARC domain 215 423 IPR002182 GO:0043531
Seca6g03365 1326 Gene3D - 25 190 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03365 Seca-Chr6 100700326 100706233 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03365 23 835 WRKY Transcription Factor Family AT4G12020 31.727 1.17e-102 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03365 - - gmx:100809963 1107.43