Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03362 ATGGCTATGGAGAAAAAGATCAGTGCTGTTGCTTCTTCCTCCGCCGCCTCTTCTTCTGTGTCGTCTCTGAAAAAATATGACGTTTTACTTAGCTTTCGAGGTGAGGATACCCGCAGAAAGTTCACAAGTCATCTTTATGATGCTTTGTGCCGAAAGAAAGTTAGAATCTTTATGGACAATGTGCTTGGAAAGGGAGATGAGATCTCTCCAGCACTCATCAAAGCCATTGAAGAGTCGCATGCATCTATAGTTATCTTCTCAGAAAACTATGCCTCCTCAACATGGTGTTTGGATGAACTCATCAAGATTCTGGAATGCAGGCAAGTGCACGGACAAATTGTGATACCTGTTTTCTACGAAATAGATCCATCACAAGTAAGGAAGCAGACTGGGAGTTACAACAAAGCCTTTGCAGCATATGAGAAACGAGGCTACACACACAAGTTGCAGAAATGGAAAAAAGCTCTCACAGAGGCGGCTAATTTATCTGGGTTCGACTCTCGTCAATATAGTAGTGATGACTGTGAACTCATTAAAAGCATTGTCAGAGATGTTTTGAAAAACTTGTATTATAGATACCCTCAACAATTGACGGGACCCGTTGTAACTGGAATAAGTTATGGGGAAATTGAATCATCACTGAAAATTGGATCAAGAGAAGTTAGAATCATTGGAATATGGGGCATGGGTGGTATAGGTAAGACCACCCTTGCTACTGCTCTATATACCAAATTGTCTTCTCAATTTGAAGGCCATTGCTTCCTTGCAAATGTAAGGGAAGAATCAAATAAATATGGACTCCATGTTTTACGTAAAAATCTTTTCTCTAAGCTGTTAGAGGAAGAAAATCTTCATCTTGATGTAACCAATCCAAAGTCCCATTTTGTGGCATGTTTGCTTAAACGTAAAAAAGTTTTTATTGTGTTGGATGATGTGACTACCTCAGAACAGTTACATGATCTAATTAGCAATTACAATTGTTGTGATTACGATTGCTTGGGACCAGGAAGTAGAGTGATTGTAACAACTAGAGATAAGAGCATATTTAGGAAAGTTCATGGAATATATGAAGTCAAGGGATTGAGTGAACATGACTCTCTTCAGCTTTTCTGTTTGAATGCCTTTGGAGAAAAGCATCCTAAAGATGGATATGAAGATCTATCACATAGTGCAATTACCTATTGCAAAGGCAATCCTTTGGCTTTAAAAGTTTTGGGTGCAATTCTTGGTTCAAAAAGAACAATAAGGGCATGGGAACATGAATTGAGAAAAGCATGA 1278 0.3873 MAMEKKISAVASSSAASSSVSSLKKYDVLLSFRGEDTRRKFTSHLYDALCRKKVRIFMDNVLGKGDEISPALIKAIEESHASIVIFSENYASSTWCLDELIKILECRQVHGQIVIPVFYEIDPSQVRKQTGSYNKAFAAYEKRGYTHKLQKWKKALTEAANLSGFDSRQYSSDDCELIKSIVRDVLKNLYYRYPQQLTGPVVTGISYGEIESSLKIGSREVRIIGIWGMGGIGKTTLATALYTKLSSQFEGHCFLANVREESNKYGLHVLRKNLFSKLLEEENLHLDVTNPKSHFVACLLKRKKVFIVLDDVTTSEQLHDLISNYNCCDYDCLGPGSRVIVTTRDKSIFRKVHGIYEVKGLSEHDSLQLFCLNAFGEKHPKDGYEDLSHSAITYCKGNPLALKVLGAILGSKRTIRAWEHELRKA. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03362 425 Pfam TIR domain 25 191 IPR000157 GO:0007165
Seca6g03362 425 Gene3D - 22 194 IPR035897 -
Seca6g03362 425 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 424 IPR044974 GO:0006952
Seca6g03362 425 Pfam NB-ARC domain 217 420 IPR002182 GO:0043531
Seca6g03362 425 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 165 IPR035897 -
Seca6g03362 425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 424 IPR027417 -
Seca6g03362 425 Gene3D - 195 357 IPR027417 -
Seca6g03362 425 SMART till_3 25 162 IPR000157 GO:0007165
Seca6g03362 425 PRINTS Disease resistance protein signature 223 238 - -
Seca6g03362 425 PRINTS Disease resistance protein signature 395 409 - -
Seca6g03362 425 PRINTS Disease resistance protein signature 299 313 - -
Seca6g03362 425 ProSiteProfiles TIR domain profile. 24 189 IPR000157 GO:0007165
Seca6g03362 425 Gene3D - 360 425 IPR042197 -
Seca6g03362 425 FunFam Disease resistance protein (TIR-NBS-LRR class) 22 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03362 Seca-Chr6 100669612 100672139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03362 21 408 WRKY Transcription Factor Family AT4G12020 30.435 4.54e-44 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03362 - - gmx:121172685 473.781