Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03344 ATGGATATTTTGCAGAGTCACAGGGCGGAGGCCATAAGCATGGCAGTTGCTTTGGTTGCCATTGTTGGTGGCACCGCTTACTACTACTATGTCACCAAAAAGCCTAAAGGGTGCTTGGATCCTGAGAACTTCAAGGAATTTAAACTTGTTAAACGCACTCAACTCAGCCATAATGTTGCCACATTCAAATTTCAACTTCCTACTCCTAGCTCTGTGCTGGGACTTCCTATTGGACAACATATCAGCTGCAGAGGGAAAGATAGTCTTGGTGAAGAAGTCATTAAACCATATACTCCCACAACATTGGATACCGATGTTGGATACTTTGAATTGGTTGTGAAGATGTATCCACAAGGAAGGATGTCTCATCACTTTAGGGAGATGCGTGAAGGTGATTACATGACAGTGAAAGGACCAAAGGGACGTTTTAAGTACCAGCCCAACCAAGTAAGAGCTTTTGGTATGATTGCTGGTGGCACTGGTATCACCCCAATGTTTCAGGTTACAAGAGCTATACTAGAAAACCCAGAAGACAAGACCAATGTAAATCTGATATATGCCAATGTCACATATGATGACATTCTTCTAAAGGAAGAGCTGGATAATTTTGCCATTAAGTTCCCAAATCGATTCAAAGTTTACTATGTCCTAAATCAGCCACCAGAAATATGGGATGGTGGTGTTGGATTTGTATCCAAGGAAATGATCCAAACACAATGCCCTGCACCAGCACCAGATATTAAGATATTAAGGTGTGGACCACCTCCCATGAACAAGGCTATTGCTGCTTATCTTGAAGCTCTTGGATACAGTTCCCAAATGCAGTTTCAGTTTTAG 837 0.4205 MDILQSHRAEAISMAVALVAIVGGTAYYYYVTKKPKGCLDPENFKEFKLVKRTQLSHNVATFKFQLPTPSSVLGLPIGQHISCRGKDSLGEEVIKPYTPTTLDTDVGYFELVVKMYPQGRMSHHFREMREGDYMTVKGPKGRFKYQPNQVRAFGMIAGGTGITPMFQVTRAILENPEDKTNVNLIYANVTYDDILLKEELDNFAIKFPNRFKVYYVLNQPPEIWDGGVGFVSKEMIQTQCPAPAPDIKILRCGPPPMNKAIAAYLEALGYSSQMQFQF. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03344 278 Gene3D - 137 276 IPR039261 -
Seca6g03344 278 SUPERFAMILY Riboflavin synthase domain-like 35 148 IPR017938 -
Seca6g03344 278 PANTHER NADH-CYTOCHROME B5 REDUCTASE 34 278 IPR001834 GO:0016491
Seca6g03344 278 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 42 146 IPR017927 GO:0016491
Seca6g03344 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 154 173 IPR001709 GO:0016491
Seca6g03344 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 192 203 IPR001709 GO:0016491
Seca6g03344 278 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 248 256 IPR001709 GO:0016491
Seca6g03344 278 CDD cyt_b5_reduct_like 47 278 - -
Seca6g03344 278 PRINTS Cytochrome B5 reductase signature 248 256 - -
Seca6g03344 278 PRINTS Cytochrome B5 reductase signature 73 84 - -
Seca6g03344 278 PRINTS Cytochrome B5 reductase signature 95 102 - -
Seca6g03344 278 PRINTS Cytochrome B5 reductase signature 192 203 - -
Seca6g03344 278 PRINTS Cytochrome B5 reductase signature 154 173 - -
Seca6g03344 278 PRINTS Cytochrome B5 reductase signature 131 145 - -
Seca6g03344 278 Gene3D Translation factors 35 136 - -
Seca6g03344 278 FunFam NADH-cytochrome b5 reductase 136 278 - -
Seca6g03344 278 FunFam NADH-cytochrome b5 reductase 37 136 - -
Seca6g03344 278 Pfam Oxidoreductase FAD-binding domain 47 145 IPR008333 -
Seca6g03344 278 Pfam Oxidoreductase NAD-binding domain 155 261 IPR001433 GO:0016491
Seca6g03344 278 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 135 272 IPR039261 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03344 Seca-Chr6 100507567 100512668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03344 27 278 NADPH P450 reductases AT5G17770 79.762 6.69e-156 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03344 K00326 - gmx:100812559 524.242